Factsheet for GSMUA_AchrUn_randomP01860_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P20500_001
GSMUA_Achr3P25020_001
GSMUA_Achr5P16630_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P05800_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31220_001
GSMUA_Achr9P19410_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64280.1	GSMUA_Achr10P...	AT1G22070.1	10659709
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G22070.1	10659709
AT1G64280.1	GSMUA_AchrUn_...	AT1G22070.1	10659709
AT1G64280.1	GSMUA_Achr10P...	AT1G22070.1	10662863
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G22070.1	10662863
AT1G64280.1	GSMUA_AchrUn_...	AT1G22070.1	10662863
AT1G64280.1	GSMUA_Achr10P...	AT1G22070.1	15634206
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G22070.1	15634206
AT1G64280.1	GSMUA_AchrUn_...	AT1G22070.1	15634206
AT1G64280.1	GSMUA_Achr7P18000_001	AT1G26830.1	19490895
AT1G64280.1	GSMUA_Achr8P16990_001	AT1G26830.1	19490895
AT1G64280.1	GSMUA_AchrUn_...	AT1G26830.1	19490895
AT1G64280.1	GSMUA_AchrUn_...	AT1G26830.1	19490895
AT1G64280.1	GSMUA_Achr10P...	AT1G77920.1	10662863
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G77920.1	10662863
AT1G64280.1	GSMUA_AchrUn_...	AT1G77920.1	10662863
AT1G64280.1	GSMUA_Achr10P...	AT1G77920.1	15634206
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G77920.1	15634206
AT1G64280.1	GSMUA_AchrUn_...	AT1G77920.1	15634206
AT1G64280.1	GSMUA_Achr2P20500_001	AT4G14110.1	19490895
AT1G64280.1	GSMUA_Achr10P...	AT5G06960.1	10659709
AT1G64280.1	GSMUA_Achr11P...	AT5G06960.1	10659709
AT1G64280.1	GSMUA_Achr3P25020_001	AT5G06960.1	10659709
AT1G64280.1	GSMUA_Achr8P05800_001	AT5G06960.1	10659709
AT1G64280.1	GSMUA_Achr10P...	AT5G06960.1	10662863
AT1G64280.1	GSMUA_Achr11P...	AT5G06960.1	10662863
AT1G64280.1	GSMUA_Achr3P25020_001	AT5G06960.1	10662863
AT1G64280.1	GSMUA_Achr8P05800_001	AT5G06960.1	10662863
AT1G64280.1	GSMUA_Achr10P...	AT5G06960.1	12383081
AT1G64280.1	GSMUA_Achr11P...	AT5G06960.1	12383081
AT1G64280.1	GSMUA_Achr3P25020_001	AT5G06960.1	12383081
AT1G64280.1	GSMUA_Achr8P05800_001	AT5G06960.1	12383081
AT1G64280.1	GSMUA_Achr10P...	AT5G06960.1	15634206
AT1G64280.1	GSMUA_Achr11P...	AT5G06960.1	15634206
AT1G64280.1	GSMUA_Achr3P25020_001	AT5G06960.1	15634206
AT1G64280.1	GSMUA_Achr8P05800_001	AT5G06960.1	15634206
AT1G64280.1	GSMUA_Achr8P31220_001	AT5G42970.1	19490895
AT1G64280.1	GSMUA_Achr9P19410_001	AT5G42970.1	19490895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P25880_001	Banana	cytosol	71.65	72.54
GSMUA_Achr8P05490_001	Banana	cytosol	72.35	71.6
GSMUA_Achr2P16670_001	Banana	cytosol	53.91	53.08
GSMUA_Achr7P09190_001	Banana	cytosol	50.96	50.96
VIT_11s0016g01990.t01	Wine grape	cytosol	50.96	50.17
Solyc07g040690.2.1	Tomato	cytosol	49.74	49.65
GSMUA_Achr6P00950_001	Banana	nucleus	53.04	48.41
KRH37416	Soybean	cytosol	47.83	47.25
CDY25575	Canola	cytosol	45.04	45.44
CDY34413	Canola	cytosol	44.52	44.99
Bra027690.1-P	Field mustard	cytosol, plastid	44.52	44.91
AT1G64280.1	Thale cress	cytosol	44.17	42.83
CDY50004	Canola	cytosol	43.48	41.95
Bra013950.1-P	Field mustard	cytosol	41.39	41.11
AT4G26120.2	Thale cress	cytosol, plastid	42.26	40.43
CDX94371	Canola	cytosol	41.57	39.5
Bra013952.1-P	Field mustard	cytosol	41.39	39.34
CDX89364	Canola	cytosol	41.57	39.31
CDX89362	Canola	cytosol	41.22	39.17
CDX94376	Canola	cytosol	40.52	38.45
GSMUA_Achr5P02120_001	Banana	cytosol	37.57	36.99
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	37.22	35.97
GSMUA_Achr5P16220_001	Banana	cytosol	20.0	26.08
GSMUA_Achr8P22070_001	Banana	cytosol	18.43	25.54
GSMUA_Achr3P08710_001	Banana	cytosol	18.78	25.35
GSMUA_Achr5P08160_001	Banana	cytosol	18.61	25.06
Bra010439.1-P	Field mustard	cytosol	41.57	24.84
GSMUA_AchrUn_...	Banana	cytosol	18.09	24.82
GSMUA_Achr11P...	Banana	cytosol	18.61	24.77
CDY14314	Canola	nucleus	34.26	23.4
GSMUA_AchrUn_...	Banana	cytosol	18.09	23.21

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.2	MapMan:26.8.3.1.1	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_AchrUn_randomG01860_001	EnsemblPlants:GSMUA_AchrUn_randomP01860_001	EnsemblPlants:GSMUA_AchrUn_randomT01860_001	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	UniProt:M0U5J8	InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900
PFAM:PF12313	PFAM:PF12796	PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413
PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695
UniParc:UPI00029539E5	SEG:seg	:	:	:	:

Description

Putative Regulatory protein NPR1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG01860_001]

Coordinates

chrchrUn_random:-:8489437..8494426

Molecular Weight (calculated)

64135.5 Da

IEP (calculated)

6.337

GRAVY (calculated)

-0.160

Length

575 amino acids

Sequence
(BLAST)

001: MEPEDSQLFS DSDITTTSSL CYPPAVAAAA EPLPSAEVAA LTRLSEHLGS LRRSPGLVFC ADACIIVRSS VGDPPLEVPV HRCVLSARSP FFLEKFAAGS
101: VALELGELVA GFEVGREALE AVLEYIYTGR PEELPRGAAE CAEESCHRHE ACWPAVHFML QVLHAAFRFE IYELVSLFQR RLLDILEKVA TDDILLILIV
201: ANLCNKHCQR LLLKCIEMVV KSDIDYMTLE KKLPGNVVKQ IVKFRSSLGS DGQSLGFPDK HVKSIYVALD MDDIELIKML LYEKHTTLDD AKALHYAVAY
301: CDPKTTKQLL DLELADVNGK DHRGYTVLHV AAMRKEPEII MSLLTRGAQP SYITSDGRTA LKISKMHTRS IDYCRPVKRG ETSPKERLCI EMLERAEAKD
401: SPTEATSVPV EMISDNLREK LLYLESRVWL AERLFPAEAK TAMNNANVDG TLKFKSSSLL QPCAGYKRSV DDVAKASLEM TAEQLSRMEA LSKTVQLGMR
501: FFPRCSNIIN KILCDDLSEL SIVERVDTEE RKNRYNEILE EMKKAFTEDK KKFDGSASAS SSKSARAVRA RVAKS

Best Arabidopsis Sequence Match ( AT1G64280.1 )
(BLAST)

001: MDTTIDGFAD SYEISSTSFV ATDNTDSSIV YLAAEQVLTG PDVSALQLLS NSFESVFDSP DDFYSDAKLV LSDGREVSFH RCVLSARSSF FKSALAAAKK
101: EKDSNNTAAV KLELKEIAKD YEVGFDSVVT VLAYVYSSRV RPPPKGVSEC ADENCCHVAC RPAVDFMLEV LYLAFIFKIP ELITLYQRHL LDVVDKVVIE
201: DTLVILKLAN ICGKACMKLL DRCKEIIVKS NVDMVSLEKS LPEELVKEII DRRKELGLEV PKVKKHVSNV HKALDSDDIE LVKLLLKEDH TNLDDACALH
301: FAVAYCNVKT ATDLLKLDLA DVNHRNPRGY TVLHVAAMRK EPQLILSLLE KGASASEATL EGRTALMIAK QATMAVECNN IPEQCKHSLK GRLCVEILEQ
401: EDKREQIPRD VPPSFAVAAD ELKMTLLDLE NRVALAQRLF PTEAQAAMEI AEMKGTCEFI VTSLEPDRLT GTKRTSPGVK IAPFRILEEH QSRLKALSKT
501: VELGKRFFPR CSAVLDQIMN CEDLTQLACG EDDTAEKRLQ KKQRYMEIQE TLKKAFSEDN LELGNSSLTD STSSTSKSTG GKRSNRKLSH RRR

Arabidopsis Description

NPR1Regulatory protein NPR1 [Source:UniProtKB/Swiss-Prot;Acc:P93002]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.