Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 79.49 | 78.81 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 73.79 | 70.96 |
| VIT_07s0031g01320.t01 | Wine grape | nucleus | 64.1 | 64.47 |
| VIT_18s0001g04470.t01 | Wine grape | nucleus | 61.25 | 59.23 |
| KRG97639 | Soybean | nucleus | 60.97 | 59.12 |
| Solyc12g056860.1.1 | Tomato | nucleus | 57.27 | 57.76 |
| Bra015646.1-P | Field mustard | nucleus | 55.27 | 57.23 |
| KRH31239 | Soybean | nucleus | 59.26 | 57.14 |
| AT5G65210.2 | Thale cress | nucleus | 58.69 | 55.98 |
| AT5G10030.3 | Thale cress | nucleus | 57.83 | 55.77 |
| Bra024366.1-P | Field mustard | nucleus | 58.12 | 55.59 |
| CDY08810 | Canola | nucleus | 58.12 | 55.59 |
| Bra028604.1-P | Field mustard | nucleus | 57.27 | 55.52 |
| CDX85782 | Canola | nucleus | 57.27 | 55.52 |
| AT1G77920.1 | Thale cress | nucleus | 57.83 | 55.16 |
| CDY14552 | Canola | nucleus | 57.55 | 55.04 |
| CDY40074 | Canola | nucleus | 56.7 | 54.97 |
| Solyc04g072460.2.1 | Tomato | nucleus | 56.13 | 54.57 |
| GSMUA_Achr8P05800_001 | Banana | nucleus | 51.57 | 54.52 |
| PGSC0003DMT400033308 | Potato | nucleus | 55.27 | 54.49 |
| KRH59415 | Soybean | nucleus | 57.27 | 54.32 |
| PGSC0003DMT400043651 | Potato | nucleus | 55.84 | 54.29 |
| CDY33975 | Canola | nucleus | 56.98 | 54.05 |
| PGSC0003DMT400070884 | Potato | nucleus | 55.56 | 54.02 |
| Bra009063.1-P | Field mustard | nucleus | 55.84 | 53.85 |
| CDX69866 | Canola | nucleus | 55.84 | 53.85 |
| CDY37811 | Canola | nucleus | 56.7 | 53.78 |
| Bra031871.1-P | Field mustard | nucleus | 56.7 | 53.78 |
| GSMUA_Achr3P25020_001 | Banana | nucleus | 50.71 | 53.61 |
| CDX68037 | Canola | nucleus | 56.41 | 53.37 |
| Solyc04g054320.2.1 | Tomato | nucleus | 56.13 | 53.24 |
| Solyc04g011670.2.1 | Tomato | nucleus | 56.7 | 53.21 |
| AT1G22070.1 | Thale cress | nucleus | 57.83 | 52.86 |
| Bra016389.1-P | Field mustard | nucleus | 55.27 | 52.72 |
| CDY38843 | Canola | nucleus | 55.56 | 52.7 |
| CDY21625 | Canola | nucleus | 54.42 | 52.47 |
| CDY41495 | Canola | nucleus | 54.99 | 52.3 |
| KRH43266 | Soybean | nucleus | 56.41 | 52.24 |
| CDY18683 | Canola | cytosol | 54.99 | 51.88 |
| Bra031364.1-P | Field mustard | nucleus | 55.84 | 51.85 |
| CDX81273 | Canola | nucleus | 56.7 | 51.16 |
| KRH63045 | Soybean | cytosol | 13.68 | 51.06 |
| KRH53141 | Soybean | nucleus | 51.57 | 50.99 |
| CDY38253 | Canola | nucleus | 55.84 | 50.91 |
| KRH16629 | Soybean | nucleus | 53.56 | 50.81 |
| KRH18838 | Soybean | nucleus | 53.28 | 50.54 |
| KRH64780 | Soybean | nucleus | 50.71 | 49.17 |
| Bra037809.1-P | Field mustard | nucleus | 53.85 | 48.21 |
| PGSC0003DMT400016235 | Potato | nucleus | 53.85 | 48.21 |
| GSMUA_Achr11P... | Banana | cytosol | 33.05 | 47.93 |
| CDY21336 | Canola | nucleus | 55.56 | 46.65 |
| CDX88399 | Canola | nucleus | 56.41 | 46.05 |
| CDX87494 | Canola | nucleus | 56.98 | 45.05 |
| GSMUA_Achr9P27700_001 | Banana | nucleus | 47.01 | 44.0 |
| GSMUA_Achr10P... | Banana | nucleus | 54.13 | 41.58 |
| GSMUA_Achr9P15550_001 | Banana | nucleus | 48.72 | 39.86 |
| Bra037374.1-P | Field mustard | nucleus | 35.33 | 39.49 |
| KRG92164 | Soybean | nucleus | 25.93 | 38.72 |
| GSMUA_Achr3P11150_001 | Banana | nucleus | 45.3 | 38.41 |
| GSMUA_Achr11P... | Banana | nucleus | 52.14 | 38.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.42 | 37.4 |
| KRH34622 | Soybean | cytosol | 24.22 | 36.8 |
| GSMUA_Achr5P26200_001 | Banana | nucleus | 40.17 | 34.73 |
| GSMUA_Achr10P... | Banana | nucleus | 45.3 | 33.69 |
| GSMUA_Achr11P... | Banana | nucleus | 46.44 | 33.13 |
| GSMUA_Achr2P06770_001 | Banana | nucleus | 45.01 | 33.05 |
| GSMUA_Achr3P22700_001 | Banana | nucleus | 44.16 | 30.63 |
| GSMUA_Achr8P21670_001 | Banana | nucleus | 50.43 | 30.41 |
| CDX79240 | Canola | nucleus | 49.29 | 30.35 |
| GSMUA_Achr9P20200_001 | Banana | plastid | 44.16 | 28.34 |
| GSMUA_Achr11P... | Banana | nucleus | 16.81 | 19.09 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr10G30500_001 | EnsemblPlants:GSMUA_Achr10P30500_001 |
| EnsemblPlants:GSMUA_Achr10T30500_001 | InterPro:IPR004827 | InterPro:IPR025422 | UniProt:M0RMS4 | PFAM:PF00170 | PFAM:PF14144 |
| ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF180 | SMART:SM00338 |
| SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI00029550AF | InterPro:bZIP | SEG:seg | : |
Description
Transcription factor TGA1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G30500_001]
Coordinates
chr10:-:32679979..32689313
Molecular Weight (calculated)
40013.1 Da
IEP (calculated)
8.817
GRAVY (calculated)
-0.472
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIYEPDHHI GMWWEDSIKT DSCQNICTSP AAETDMRLVY MLEDIPHKEL TQPKDHDQET NKSSDKVLRR LAQNREAARK SRLRKKAYVQ QLESSRLKLC
101: QLEQELEQVR QKGIYIGGRL GERTLGLSGS VNSGIAAFEM QYGHWVEKQN QQTCQLRAAL QAHASDFELH MLVKSGIRHY DNLFRIKAIT AKSDVFYLMS
201: GMWRTPTERF FLWIGGFRPS KLLKVLSSQL NPLTEQQMRA VTGLQQCSQQ AEDALSQGLD KLQQTLSETL ACDPFGTFGA KNYMGQMAIA MTKLEALVSF
301: VNQADHLRQQ ALQQMYNILT TRQSARGLLA LGDYFQCLRT LSSLWATRPP S
101: QLEQELEQVR QKGIYIGGRL GERTLGLSGS VNSGIAAFEM QYGHWVEKQN QQTCQLRAAL QAHASDFELH MLVKSGIRHY DNLFRIKAIT AKSDVFYLMS
201: GMWRTPTERF FLWIGGFRPS KLLKVLSSQL NPLTEQQMRA VTGLQQCSQQ AEDALSQGLD KLQQTLSETL ACDPFGTFGA KNYMGQMAIA MTKLEALVSF
301: VNQADHLRQQ ALQQMYNILT TRQSARGLLA LGDYFQCLRT LSSLWATRPP S
001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT
Arabidopsis Description
TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.