Factsheet for Solyc04g072460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009890.1.1
Solyc01g009900.2.1
Solyc01g009910.1.1
Solyc05g015910.1.1
Solyc07g040690.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	Solyc07g040690.2.1	AT1G64280.1	10659709
AT1G22070.1	Solyc07g040690.2.1	AT1G64280.1	10662863
AT1G22070.1	Solyc07g040690.2.1	AT1G64280.1	15634206
AT1G22070.1	Solyc07g040690.2.1	AT1G64280.1	21798944
AT1G22070.1	Solyc01g009890.1.1	AT3G02000.1	19218396
AT1G22070.1	Solyc01g009900.2.1	AT3G02000.1	19218396
AT1G22070.1	Solyc01g009910.1.1	AT3G02000.1	19218396
AT1G22070.1	Solyc05g015910.1.1	AT3G02000.1	19218396
AT1G77920.1	Solyc07g040690.2.1	AT1G64280.1	10662863
AT1G77920.1	Solyc07g040690.2.1	AT1G64280.1	15634206
AT1G77920.1	Solyc01g009890.1.1	AT3G02000.1	19218396
AT1G77920.1	Solyc01g009900.2.1	AT3G02000.1	19218396
AT1G77920.1	Solyc01g009910.1.1	AT3G02000.1	19218396
AT1G77920.1	Solyc05g015910.1.1	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070884	Potato	nucleus	98.34	98.34
Solyc12g056860.1.1	Tomato	nucleus	81.72	84.77
VIT_18s0001g04470.t01	Wine grape	nucleus	66.76	66.39
Bra015646.1-P	Field mustard	nucleus	57.06	60.77
KRH63045	Soybean	cytosol	15.79	60.64
GSMUA_Achr5P16630_001	Banana	nucleus	60.39	59.73
AT1G77920.1	Thale cress	nucleus	60.66	59.51
CDX68037	Canola	nucleus	60.66	59.03
Bra031364.1-P	Field mustard	nucleus	60.94	58.2
Zm00001d016312_P001	Maize	cytosol	14.96	58.06
GSMUA_AchrUn_...	Banana	nucleus	56.23	57.34
Bra016389.1-P	Field mustard	nucleus	58.45	57.34
CDY38843	Canola	nucleus	58.73	57.3
CDY41495	Canola	nucleus	58.45	57.18
KRH53141	Soybean	nucleus	55.96	56.9
CDY38253	Canola	nucleus	60.66	56.88
AT1G22070.1	Thale cress	nucleus	60.39	56.77
KRH18838	Soybean	nucleus	57.89	56.49
GSMUA_Achr10P...	Banana	nucleus	54.57	56.13
KRH16629	Soybean	nucleus	56.79	55.41
Solyc04g054320.2.1	Tomato	nucleus	55.96	54.59
KRH64780	Soybean	nucleus	54.57	54.42
Solyc04g011670.2.1	Tomato	nucleus	55.4	53.48
CDY21336	Canola	nucleus	60.66	52.39
Solyc11g064950.1.1	Tomato	nucleus	46.81	52.16
Solyc01g008730.2.1	Tomato	nucleus	45.43	50.15
CDX88399	Canola	nucleus	59.28	49.77
CDX87494	Canola	nucleus	60.11	48.87
Os04t0637000-01	Rice	nucleus	52.63	47.86
KXG27222	Sorghum	nucleus	54.02	47.79
Zm00001d026398_P006	Maize	nucleus	52.91	46.36
KXG38496	Sorghum	nucleus	37.67	43.73
Solyc10g080780.1.1	Tomato	cytosol	32.13	43.12
Zm00001d002143_P002	Maize	cytosol	52.08	42.82
TraesCS2A01G526300.1	Wheat	nucleus	49.58	42.72
TraesCS2D01G529000.1	Wheat	nucleus	50.14	42.59
Zm00001d024160_P003	Maize	nucleus	49.86	42.45
TraesCS2B01G556600.1	Wheat	nucleus	50.97	42.3
Os08t0176900-01	Rice	nucleus	42.94	39.85
Solyc10g080770.1.1	Tomato	nucleus	49.58	39.78
Solyc11g068370.1.1	Tomato	nucleus	40.72	39.52
Zm00001d041428_P001	Maize	cytosol	16.9	39.1
OQU79985	Sorghum	golgi, vacuole	50.14	35.08
Solyc05g009660.2.1	Tomato	nucleus	45.43	33.88
CDX79240	Canola	nucleus	53.19	33.68
Solyc10g080410.1.1	Tomato	nucleus	41.0	32.24
Solyc06g074320.2.1	Tomato	nucleus	44.04	31.74
Solyc10g078670.1.1	Tomato	nucleus	41.0	30.39
HORVU2Hr1G116090.2	Barley	cytosol	33.8	28.84

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	UniProt:K4BTN3	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF180	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc04g072460.2
EnsemblPlants:Solyc04g072460.2.1	InterPro:TGA_domain	UniParc:UPI0002766DEF	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:59482373..59485192

Molecular Weight (calculated)

40882.9 Da

IEP (calculated)

7.237

GRAVY (calculated)

-0.475

Length

361 amino acids

Sequence
(BLAST)

001: MTSPTTQFAP TRRMGIYEPF HQMSVWEDAF RGDIMPSADA CMVSHPNDRP DDKSGYTSGE QHMPSGSGDN QGPRSSSDKV QRRLAQNREA ARKSRMRKKA
101: YVQQLETSRL KLAQLELELE RARQQGLYML GSNSNMGLLG TINPGIAAFE IEYSHWVEEQ QKKNAELRSI LQSPVSDMEL QLLVENVLSH YFNLFRMKAD
201: AAKADVFYLM SGVWRTSVER FFLWIGGFKP SELINVVMPQ LEPLADQQII KVCNLRHCCQ QAEDALTQGM DKLQQTLAQS ILNMNTGAGN YTSQMVSSME
301: NLEALESFVN QADHLRQQTL QQMSIILTTH QAARGLLAFG EYVQRLRALS SLWAARPREP T

Best Arabidopsis Sequence Match ( AT5G65210.5 )
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Arabidopsis Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.