Factsheet for Solyc04g011670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016235	Potato	nucleus	89.84	85.71
Solyc04g054320.2.1	Tomato	nucleus	76.47	77.3
VIT_07s0031g01320.t01	Wine grape	nucleus	64.97	69.63
AT5G10030.3	Thale cress	nucleus	62.83	64.56
KRG97639	Soybean	nucleus	62.03	64.09
AT5G65210.2	Thale cress	nucleus	62.57	63.59
Bra024366.1-P	Field mustard	nucleus	61.76	62.94
CDY08810	Canola	nucleus	61.76	62.94
KRH31239	Soybean	nucleus	61.23	62.91
Bra028604.1-P	Field mustard	nucleus	60.7	62.71
CDX85782	Canola	nucleus	60.7	62.71
CDY14552	Canola	nucleus	60.96	62.13
GSMUA_Achr5P16630_001	Banana	nucleus	60.43	61.92
CDY40074	Canola	nucleus	59.89	61.88
CDY33975	Canola	nucleus	60.7	61.35
Bra031871.1-P	Field mustard	nucleus	60.43	61.08
CDY37811	Canola	nucleus	60.43	61.08
CDX69866	Canola	nucleus	58.82	60.44
Bra009063.1-P	Field mustard	nucleus	58.82	60.44
CDY21625	Canola	nucleus	57.22	58.79
CDY18683	Canola	cytosol	58.29	58.6
KRH59415	Soybean	nucleus	57.49	58.11
KRH43266	Soybean	nucleus	58.56	57.78
GSMUA_AchrUn_...	Banana	nucleus	54.28	57.34
CDX81273	Canola	nucleus	59.63	57.33
GSMUA_Achr10P...	Banana	nucleus	53.21	56.7
Solyc12g056860.1.1	Tomato	nucleus	52.67	56.61
Solyc11g064950.1.1	Tomato	nucleus	48.93	56.48
Solyc04g072460.2.1	Tomato	nucleus	53.48	55.4
Solyc01g008730.2.1	Tomato	nucleus	48.4	55.35
Zm00001d016312_P001	Maize	cytosol	13.64	54.84
Bra037809.1-P	Field mustard	nucleus	56.95	54.34
Os04t0637000-01	Rice	nucleus	50.27	47.36
KXG27222	Sorghum	nucleus	51.34	47.06
Zm00001d026398_P006	Maize	nucleus	50.8	46.12
Solyc10g080780.1.1	Tomato	cytosol	33.16	46.1
TraesCS2A01G526300.1	Wheat	nucleus	48.93	43.68
TraesCS2D01G529000.1	Wheat	nucleus	48.4	42.59
TraesCS2B01G556600.1	Wheat	nucleus	49.47	42.53
KXG38496	Sorghum	nucleus	35.03	42.12
Solyc10g080770.1.1	Tomato	nucleus	50.53	42.0
Zm00001d041428_P001	Maize	cytosol	17.11	41.03
Bra037374.1-P	Field mustard	nucleus	33.96	40.45
Zm00001d024160_P003	Maize	nucleus	45.45	40.09
Zm00001d002143_P002	Maize	cytosol	47.06	40.09
KRG92164	Soybean	nucleus	24.87	39.57
KRH34622	Soybean	cytosol	24.06	38.96
Os08t0176900-01	Rice	nucleus	40.37	38.82
Solyc11g068370.1.1	Tomato	nucleus	37.7	37.9
Solyc05g009660.2.1	Tomato	nucleus	46.79	36.16
Solyc10g080410.1.1	Tomato	nucleus	42.25	34.42
OQU79985	Sorghum	golgi, vacuole	47.33	34.3
Solyc06g074320.2.1	Tomato	nucleus	42.25	31.54
Solyc10g078670.1.1	Tomato	nucleus	40.64	31.21
HORVU2Hr1G116090.2	Barley	cytosol	31.82	28.13

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	UniProt:K4BPM0	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF266	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc04g011670.2
EnsemblPlants:Solyc04g011670.2.1	InterPro:TGA_domain	UniParc:UPI0002765FF6	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:4150679..4155134

Molecular Weight (calculated)

42397.7 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.427

Length

374 amino acids

Sequence
(BLAST)

001: MNSSTYTQFV ASRRMGICEP IHQIGMWDDF NASCPSTSTT MILEVEKCLE DQIPMMDKRL DIETEDTSHG TVGTSNRYEA ETSKPIEKVL RRLAQNREAA
101: RKSRLRKKAY VQQLENSKLK LIQLEQELDR ARKQGLYVGA GLDASQLSYS GTASSGTAVF DTEYGQWVEE QNRQTNDLRN ALHHSQISEA ELRIIVDGCL
201: NHYYELFRVK ATAAKADVLY IMSGMWKTSA ERFFMWIGGF RPSELLKVLT PHLELLTEQQ LREVCNLRQS CQQAEDALSQ GMVKLHQILA EAVAAGQLGE
301: GNYSLPQMGP AIEKLEALVR FVNQADHLRQ ETLQQMSRIL NTLQAAQGLL ALGEYFERLR VLSSHWATRL HEPA

Best Arabidopsis Sequence Match ( AT5G65210.5 )
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Arabidopsis Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.