Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003927_P001 | |
| Zm00001d016593_P001 | |
| Zm00001d039469_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016312_P001 | Maize | cytosol | 20.63 | 91.4 |
| KXG27222 | Sorghum | nucleus | 87.38 | 88.24 |
| Zm00001d002143_P002 | Maize | cytosol | 77.67 | 72.89 |
| Os04t0637000-01 | Rice | nucleus | 66.26 | 68.77 |
| TraesCS2D01G529000.1 | Wheat | nucleus | 64.81 | 62.82 |
| TraesCS2A01G526300.1 | Wheat | nucleus | 63.11 | 62.05 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 64.56 | 61.15 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 52.18 | 58.9 |
| VIT_07s0031g01320.t01 | Wine grape | nucleus | 47.82 | 56.45 |
| AT5G10030.3 | Thale cress | nucleus | 47.82 | 54.12 |
| VIT_18s0001g04470.t01 | Wine grape | nucleus | 47.57 | 53.99 |
| Solyc04g072460.2.1 | Tomato | nucleus | 46.36 | 52.91 |
| KRG97639 | Soybean | nucleus | 46.36 | 52.76 |
| PGSC0003DMT400070884 | Potato | nucleus | 46.12 | 52.63 |
| Bra015646.1-P | Field mustard | nucleus | 43.2 | 52.51 |
| Bra028604.1-P | Field mustard | nucleus | 45.87 | 52.21 |
| CDX85782 | Canola | nucleus | 45.87 | 52.21 |
| Bra009063.1-P | Field mustard | nucleus | 46.12 | 52.2 |
| CDX69866 | Canola | nucleus | 46.12 | 52.2 |
| CDY08810 | Canola | nucleus | 46.36 | 52.04 |
| Bra024366.1-P | Field mustard | nucleus | 46.36 | 52.04 |
| KRH31239 | Soybean | nucleus | 45.87 | 51.92 |
| CDY40074 | Canola | nucleus | 45.39 | 51.66 |
| CDY33975 | Canola | nucleus | 46.12 | 51.35 |
| CDY37811 | Canola | nucleus | 46.12 | 51.35 |
| CDY14552 | Canola | nucleus | 45.63 | 51.23 |
| CDY21625 | Canola | nucleus | 45.15 | 51.1 |
| Bra031871.1-P | Field mustard | nucleus | 45.87 | 51.08 |
| Solyc12g056860.1.1 | Tomato | nucleus | 42.96 | 50.86 |
| AT5G65210.2 | Thale cress | nucleus | 45.39 | 50.82 |
| Solyc04g011670.2.1 | Tomato | nucleus | 46.12 | 50.8 |
| PGSC0003DMT400043651 | Potato | nucleus | 43.93 | 50.14 |
| Solyc04g054320.2.1 | Tomato | nucleus | 44.9 | 50.0 |
| Zm00001d024160_P003 | Maize | nucleus | 50.97 | 49.53 |
| Zm00001d022542_P002 | Maize | nucleus | 39.81 | 49.25 |
| PGSC0003DMT400033308 | Potato | nucleus | 42.48 | 49.16 |
| CDX68037 | Canola | nucleus | 44.17 | 49.06 |
| AT1G77920.1 | Thale cress | nucleus | 43.45 | 48.64 |
| KRH59415 | Soybean | nucleus | 43.2 | 48.11 |
| KRH63045 | Soybean | cytosol | 10.92 | 47.87 |
| KRH43266 | Soybean | nucleus | 43.69 | 47.49 |
| CDY18683 | Canola | cytosol | 42.72 | 47.31 |
| CDX81273 | Canola | nucleus | 44.17 | 46.79 |
| KRH53141 | Soybean | nucleus | 40.05 | 46.48 |
| KRH18838 | Soybean | nucleus | 41.5 | 46.22 |
| Zm00001d041428_P001 | Maize | cytosol | 17.48 | 46.15 |
| KRH64780 | Soybean | nucleus | 40.53 | 46.13 |
| Bra031364.1-P | Field mustard | nucleus | 42.23 | 46.03 |
| KRH16629 | Soybean | nucleus | 41.26 | 45.95 |
| CDY38253 | Canola | nucleus | 42.72 | 45.71 |
| AT1G22070.1 | Thale cress | nucleus | 42.48 | 45.57 |
| PGSC0003DMT400016235 | Potato | nucleus | 43.2 | 45.41 |
| Zm00001d023424_P001 | Maize | nucleus | 33.98 | 45.16 |
| CDY38843 | Canola | nucleus | 40.53 | 45.14 |
| Bra016389.1-P | Field mustard | nucleus | 40.29 | 45.11 |
| CDY41495 | Canola | nucleus | 40.29 | 44.99 |
| Bra037809.1-P | Field mustard | nucleus | 41.75 | 43.88 |
| Zm00001d010658_P001 | Maize | nucleus | 36.16 | 43.19 |
| CDY21336 | Canola | nucleus | 42.96 | 42.34 |
| CDX88399 | Canola | nucleus | 43.93 | 42.09 |
| CDX87494 | Canola | nucleus | 44.66 | 41.44 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 42.23 | 41.13 |
| Zm00001d008225_P001 | Maize | nucleus | 40.53 | 39.76 |
| Zm00001d028936_P001 | Maize | nucleus | 36.41 | 38.36 |
| KRG92164 | Soybean | nucleus | 21.6 | 37.87 |
| Zm00001d037317_P003 | Maize | nucleus | 37.62 | 35.88 |
| Zm00001d037316_P008 | Maize | cytosol, nucleus, peroxisome, plastid | 29.37 | 35.69 |
| KRH34622 | Soybean | cytosol | 19.66 | 35.06 |
| Bra037374.1-P | Field mustard | nucleus | 26.7 | 35.03 |
| Zm00001d005143_P001 | Maize | nucleus | 34.22 | 34.31 |
| Zm00001d052543_P001 | Maize | nucleus | 39.08 | 33.13 |
| Zm00001d015845_P001 | Maize | cytosol | 21.12 | 32.34 |
| Zm00001d043153_P001 | Maize | nucleus | 32.52 | 31.75 |
| Zm00001d020938_P002 | Maize | nucleus | 37.14 | 31.48 |
| Zm00001d012553_P003 | Maize | nucleus | 34.95 | 30.64 |
| Zm00001d006027_P002 | Maize | nucleus | 37.38 | 30.62 |
| Zm00001d046751_P001 | Maize | nucleus | 32.28 | 29.04 |
| Zm00001d038296_P001 | Maize | nucleus | 36.16 | 28.71 |
| CDX79240 | Canola | nucleus | 37.86 | 27.37 |
| Zm00001d012294_P009 | Maize | nucleus | 35.44 | 26.31 |
| Zm00001d042777_P006 | Maize | nucleus | 37.14 | 23.54 |
| Zm00001d015846_P001 | Maize | nucleus | 9.71 | 19.8 |
| Zm00001d045823_P001 | Maize | cytosol | 13.84 | 18.87 |
Protein Annotations
| Gene3D:1.20.5.170 | EntrezGene:100192007 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | UniProt:A0A1D6JFC7 | ProteinID:AQK46478.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR004827 | InterPro:IPR025422 | PFAM:PF00170 | PFAM:PF14144 |
| ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF180 | SMART:SM00338 |
| SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI0004DEC74D | EnsemblPlantsGene:Zm00001d026398 | EnsemblPlants:Zm00001d026398_P006 | EnsemblPlants:Zm00001d026398_T006 |
| InterPro:bZIP | SEG:seg | : | : | : | : |
Description
bZIP-transcription factor 113Transcription factor TGA4
Coordinates
chr10:+:145212941..145218612
Molecular Weight (calculated)
45587.3 Da
IEP (calculated)
7.091
GRAVY (calculated)
-0.412
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MELYSGYLDD HFNPHKLSIA GSAVSPPEYM ASASPAQFAA APLRMGYGRP APAPPPPVMG MWSSEPFRVD SGSAHATSAS TVNTKLEETR LEDDAQVALE
101: PARSTEQETS RPPERAQRRL AQNREAARKS RLRKKAYIQQ LETSRMKLSQ LELELQRARQ QVGVHGRGAY ANSGSMGDSA LGYRCPIDPG VSVFEIDYSH
201: WVDEQKRHTA ELTSALQGQQ TSELELRLLV ETGLSNYEHL FKIKAAAANA DVFYVMSGLW KTPAERFFLW IGGFRPSEVL KILSPQLEPL AEAQRMLVGG
301: LQHTSAQAED ALSQGMEKLQ QNLAETLTAE ADPFGPPDPY MLQMATAVGI LKELVNFVTQ ADHLRLTTLQ QMHKILTPRQ AARGLLALGD YFQRLRTLSS
401: MWAARPREAA VS
101: PARSTEQETS RPPERAQRRL AQNREAARKS RLRKKAYIQQ LETSRMKLSQ LELELQRARQ QVGVHGRGAY ANSGSMGDSA LGYRCPIDPG VSVFEIDYSH
201: WVDEQKRHTA ELTSALQGQQ TSELELRLLV ETGLSNYEHL FKIKAAAANA DVFYVMSGLW KTPAERFFLW IGGFRPSEVL KILSPQLEPL AEAQRMLVGG
301: LQHTSAQAED ALSQGMEKLQ QNLAETLTAE ADPFGPPDPY MLQMATAVGI LKELVNFVTQ ADHLRLTTLQ QMHKILTPRQ AARGLLALGD YFQRLRTLSS
401: MWAARPREAA VS
001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
Arabidopsis Description
TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.