Factsheet for Zm00001d037317_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003927_P001
Zm00001d016593_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68640.1	Zm00001d003927_P001	AT3G02000.1	19218396
AT1G68640.1	Zm00001d016593_P001	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	65.97	84.07
OQU76203	Sorghum	nucleus	89.35	83.55
Os10t0566200-00	Rice	extracellular	18.52	67.8
Os06t0265400-01	Rice	nucleus	58.56	65.71
HORVU7Hr1G042180.5	Barley	nucleus	55.79	63.93
TraesCS7A01G207100.1	Wheat	nucleus	61.81	60.27
TraesCS7D01G209800.1	Wheat	nucleus	62.27	60.04
TraesCS7B01G114300.1	Wheat	nucleus	62.04	59.82
Zm00001d022542_P002	Maize	nucleus	45.14	58.56
GSMUA_Achr9P15550_001	Banana	nucleus	55.79	56.18
Os01t0882200-00	Rice	cytosol, extracellular	18.29	55.63
Zm00001d010658_P001	Maize	nucleus	42.59	53.33
VIT_01s0011g03230.t01	Wine grape	nucleus	54.63	52.1
Zm00001d023424_P001	Maize	nucleus	36.11	50.32
Zm00001d008225_P001	Maize	nucleus	48.15	49.52
Solyc05g009660.2.1	Tomato	nucleus	54.63	48.76
KRG90784	Soybean	nucleus	50.69	48.13
PGSC0003DMT400033741	Potato	nucleus	53.7	48.03
Bra004329.1-P	Field mustard	nucleus	48.84	47.85
AT1G68640.1	Thale cress	nucleus	50.0	47.79
CDY38608	Canola	nucleus	48.84	47.74
CDX95999	Canola	nucleus	48.84	47.74
KRH35977	Soybean	nucleus	50.0	47.37
Zm00001d028936_P001	Maize	nucleus	41.44	45.78
KRH70569	Soybean	nucleus	48.61	44.97
Zm00001d043153_P001	Maize	nucleus	43.75	44.79
KRH75411	Soybean	nucleus	49.77	44.24
Zm00001d012553_P003	Maize	nucleus	46.53	42.77
Zm00001d016312_P001	Maize	cytosol	8.8	40.86
Zm00001d015845_P001	Maize	cytosol	24.54	39.41
Zm00001d005143_P001	Maize	nucleus	36.81	38.69
Zm00001d026398_P006	Maize	nucleus	35.88	37.62
Zm00001d024160_P003	Maize	nucleus	36.34	37.03
Zm00001d052543_P001	Maize	nucleus	40.05	35.6
Zm00001d020938_P002	Maize	nucleus	38.43	34.16
Zm00001d002143_P002	Maize	cytosol	33.8	33.26
Zm00001d041428_P001	Maize	cytosol	11.81	32.69
Zm00001d006027_P002	Maize	nucleus	37.5	32.21
Zm00001d012294_P009	Maize	nucleus	40.51	31.53
Zm00001d046751_P001	Maize	nucleus	33.1	31.22
Zm00001d038296_P001	Maize	nucleus	37.27	31.02
Zm00001d042777_P006	Maize	nucleus	41.44	27.54
Zm00001d015846_P001	Maize	nucleus	9.95	21.29
Zm00001d045823_P001	Maize	cytosol	13.89	19.87

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:107403067	MapMan:15.5.4.1	MapMan:15.5.4.7.1	UniProt:A0A1D6LWH9	ProteinID:AQK83588.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF371	SMART:SM00338
SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000221282C	EnsemblPlantsGene:Zm00001d037317	EnsemblPlants:Zm00001d037317_P003	EnsemblPlants:Zm00001d037317_T003
InterPro:bZIP	SEG:seg	:	:	:	:

Description

fasciated ear4Transcription factor PERIANTHIA

Coordinates

chr6:-:120724116..120726773

Molecular Weight (calculated)

46927.8 Da

IEP (calculated)

7.458

GRAVY (calculated)

-0.268

Length

432 amino acids

Sequence
(BLAST)

001: MHRQPSPHAF SSSGSWAEQG AGGYRHGRDG ATFLLPELLQ RSPNPSSKSS SAATFVPPLA AAHGGGVAAP FGMAPLGVAA ADEARFCMTP WSAAAHFENW
101: GDSGIVVTSP LAETASTDVD MGGGGAMAQS VDGHDNSLPA CKVEPRDHKA QRRLAQNREA ARKSRMRKKA YIVELENSRS KLSHLEQELQ RARQQGMFIA
201: SGRSGDHGCS TGGALAFDLE YARWLDEHQH HMNDLRVALS AQIGDDDLGV LVDGAMLHYD QMFRLKGVAT RTDVFHVLSG MWMSPAERFF MWLGGFRSSE
301: LLKVLARHVE PLTEQQLVGI CGLQQSLQQA EDALSQGMEA LQQALGDTLA AAATPCAADS VTNYMGQMAV AMSKLATVEN FLRQADLLRQ QTLKQVRRIL
401: TTRQAARALL VISDYFSRLR ALSSLWLTRP TD

Best Arabidopsis Sequence Match ( AT1G68640.1 )
(BLAST)

001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD

Arabidopsis Description

PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.