Factsheet for Zm00001d042777_P006

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33735	Sorghum	nucleus	77.54	94.56
Zm00001d012294_P009	Maize	nucleus	73.23	85.77
Os01t0859500-01	Rice	nucleus	67.38	81.26
TraesCS3B01G404800.2	Wheat	nucleus	65.85	74.69
TraesCS3A01G372400.2	Wheat	nucleus	65.69	74.52
TraesCS3D01G365200.3	Wheat	nucleus	66.15	74.14
Zm00001d038296_P001	Maize	nucleus	52.15	65.32
Zm00001d023424_P001	Maize	nucleus	30.15	63.23
GSMUA_Achr11P...	Banana	cytosol	22.77	61.16
Solyc11g068370.1.1	Tomato	nucleus	33.85	59.14
PGSC0003DMT400067782	Potato	nucleus	29.54	58.36
HORVU3Hr1G084340.10	Barley	nucleus	49.38	56.41
GSMUA_Achr11P...	Banana	nucleus	42.46	56.1
GSMUA_Achr10P...	Banana	nucleus	39.54	54.45
Bra031622.1-P	Field mustard	nucleus	35.69	54.21
Zm00001d022542_P002	Maize	nucleus	27.69	54.05
CDY22689	Canola	nucleus	35.54	53.97
GSMUA_Achr5P26200_001	Banana	nucleus	33.54	53.69
Bra018634.1-P	Field mustard	nucleus	38.77	53.05
VIT_06s0080g00360.t01	Wine grape	nucleus	40.77	53.0
PGSC0003DMT400018306	Potato	nucleus	39.69	52.87
CDX95068	Canola	nucleus	38.77	52.72
AT1G08320.4	Thale cress	nucleus	38.92	52.6
CDX93571	Canola	nucleus	38.62	52.51
Solyc06g074320.2.1	Tomato	nucleus	40.46	52.49
CDY06309	Canola	nucleus	38.46	51.65
KRH26635	Soybean	nucleus	38.15	50.82
KRH22685	Soybean	nucleus	38.15	50.61
GSMUA_Achr3P22700_001	Banana	nucleus	39.23	50.4
KRH30432	Soybean	nucleus	38.0	50.1
Zm00001d052543_P001	Maize	nucleus	37.38	50.0
KRH25227	Soybean	nucleus	38.31	49.7
Zm00001d010658_P001	Maize	nucleus	25.08	47.25
Zm00001d008225_P001	Maize	nucleus	29.23	45.24
Zm00001d028936_P001	Maize	nucleus	26.0	43.22
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	22.15	42.48
Zm00001d016312_P001	Maize	cytosol	6.0	41.94
Zm00001d037317_P003	Maize	nucleus	27.54	41.44
Zm00001d015845_P001	Maize	cytosol	16.31	39.41
Zm00001d043153_P001	Maize	nucleus	25.08	38.63
Zm00001d020938_P002	Maize	nucleus	28.46	38.07
Zm00001d026398_P006	Maize	nucleus	23.54	37.14
Zm00001d012553_P003	Maize	nucleus	26.62	36.81
Zm00001d005143_P001	Maize	nucleus	23.23	36.74
GSMUA_Achr11P...	Banana	nucleus	16.92	35.6
Zm00001d046751_P001	Maize	nucleus	24.92	35.37
Zm00001d006027_P002	Maize	nucleus	27.08	34.99
Zm00001d024160_P003	Maize	nucleus	22.46	34.43
Zm00001d002143_P002	Maize	cytosol	22.62	33.49
Zm00001d041428_P001	Maize	cytosol	7.85	32.69
Zm00001d015846_P001	Maize	nucleus	9.23	29.7
Zm00001d045823_P001	Maize	cytosol	9.54	20.53

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EntrezGene:541670	UniProt:A0A1D6N6N6	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:1905623	InterPro:IPR004827	InterPro:IPR025422	ProteinID:ONM36256.1	PFAM:PF00170	PFAM:PF14144
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF215	SMART:SM00338
SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000842D6C7	EnsemblPlantsGene:Zm00001d042777	EnsemblPlants:Zm00001d042777_P006	EnsemblPlants:Zm00001d042777_T006
InterPro:bZIP	SEG:seg	:	:	:	:

Description

liguleless2Basic leucine zipper protein%3B Liguleless2

Coordinates

chr3:+:179387828..179396383

Molecular Weight (calculated)

70241.2 Da

IEP (calculated)

7.232

GRAVY (calculated)

-0.289

Length

650 amino acids

Sequence
(BLAST)

001: MVQGEESSWR MERAALPLNQ ALAYGVQAHA AAAAAPPTCF LYNFALLYSP SPPPTALPAG LLLVVELAVA MVQGEESSWR MERAALPLNQ LALAYGVQAH
101: AAAAAAAAAP PTCFLDFQPA AASAAYFGFG ELEEALIHGG GAASAGGGVD PGVIIKNDVA QAKSAAGYLA GAGTGRPPTL EIFPSWPMRH QQQLHSGNSQ
201: SVGSTGTDSS SAQNTMSQME LVSPASSAPR QEVMMVTTDD YSYKPGLAAA PAAAAPPSFQ QHHPLPLQLH GGEGGGDHDK RKHGSTRKDG KLVDAKTERR
301: LAQNREAARK SRLRKKAYVQ QLETSRIRLQ QVEHELQRAR SQGLFVGGCS AAGDMSSGNA QHRPSASSIH SQYHCSKASS FLPCSCGLQL QLSCRSRSRP
401: QRGAAMFDME YARWLDDDTK RLAELRGGLQ AHLLDGNLGL IVEECMQHYD ELFQLKAALA RSDVFHLLTG SWATPAERCF FWMGGFRPSE LLKILIPQLD
501: PLTEQQLLGI CNLQQSSEQA EEALAQGLHQ LHQSLADTVA AGTLNDGAAA PNYMNIMAVA LEKLASLENF YQQADNLRHQ TLHQMRRILT TRQAARCFLS
601: IGEYYSRLRA LSNLWASRPR DNFIGTESLS PTATELQALH HQQQNQFAGF

Best Arabidopsis Sequence Match ( AT1G08320.1 )
(BLAST)

001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F

Arabidopsis Description

TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.