Factsheet for Zm00001d008225_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003927_P001
Zm00001d004966_P001
Zm00001d008225_P001
Zm00001d010658_P001
Zm00001d011878_P001
Zm00001d012553_P003
Zm00001d016593_P001
Zm00001d022542_P002
Zm00001d023246_P001
Zm00001d028936_P001
Zm00001d039469_P001
Zm00001d042111_P001
Zm00001d043153_P001
Zm00001d052468_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	10659709
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	10662863
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	12383081
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	15634206
AT5G06960.1	Zm00001d004966_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d011878_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d023246_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d042111_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d052468_P002	AT2G41370.1	21798944
AT5G06960.1	Zm00001d003927_P001	AT3G02000.1	19218396
AT5G06960.1	Zm00001d016593_P001	AT3G02000.1	19218396
AT5G06960.1	Zm00001d008225_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d010658_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d012553_P003	AT5G06960.1	17098811
AT5G06960.1	Zm00001d022542_P002	AT5G06960.1	17098811
AT5G06960.1	Zm00001d028936_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d043153_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d008225_P001	AT5G06960.1	21798944
AT5G06960.1	Zm00001d010658_P001	AT5G06960.1	21798944
AT5G06960.1	Zm00001d012553_P003	AT5G06960.1	21798944
AT5G06960.1	Zm00001d022542_P002	AT5G06960.1	21798944
AT5G06960.1	Zm00001d028936_P001	AT5G06960.1	21798944
AT5G06960.1	Zm00001d043153_P001	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02530	Sorghum	nucleus	77.38	98.48
Os01t0279900-01	Rice	nucleus	72.14	92.1
TraesCS3B01G220400.2	Wheat	nucleus	71.9	90.96
TraesCS3A01G190700.2	Wheat	nucleus	71.9	90.96
HORVU3Hr1G042790.4	Barley	nucleus	71.67	90.94
TraesCS3D01G194800.2	Wheat	nucleus	71.43	90.36
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	31.67	89.26
KRH36324	Soybean	nucleus	65.0	82.23
Solyc11g064950.1.1	Tomato	nucleus	63.1	81.79
PGSC0003DMT400024428	Potato	nucleus	63.1	81.79
Zm00001d022542_P002	Maize	nucleus	62.62	78.98
CDY08443	Canola	nucleus	61.19	77.64
Bra034767.1-P	Field mustard	nucleus	60.95	77.34
AT5G06950.5	Thale cress	nucleus	60.24	76.67
Solyc01g008730.2.1	Tomato	nucleus	59.29	76.15
CDX73830	Canola	nucleus	60.0	76.13
Bra001443.1-P	Field mustard	nucleus	60.0	76.13
Bra009241.1-P	Field mustard	nucleus	56.19	76.13
CDY00762	Canola	nucleus	59.52	75.53
CDX70053	Canola	nucleus	58.33	74.92
CDY50562	Canola	nucleus	59.52	74.85
Bra038705.1-P	Field mustard	nucleus	59.52	74.85
CDY52616	Canola	nucleus	59.29	74.77
CDX98971	Canola	nucleus	58.33	74.7
AT5G06960.1	Thale cress	nucleus	58.57	74.55
PGSC0003DMT400026710	Potato	mitochondrion	30.95	73.86
CDY05010	Canola	nucleus	57.14	73.62
CDY14061	Canola	nucleus	56.9	73.31
Bra028713.1-P	Field mustard	nucleus	56.9	73.31
AT3G12250.4	Thale cress	nucleus	60.48	71.55
KRH66777	Soybean	nucleus	47.62	68.97
CDY42138	Canola	nucleus	52.14	67.59
Zm00001d010658_P001	Maize	nucleus	52.62	64.06
VIT_08s0007g05170.t01	Wine grape	nucleus	68.33	63.64
PGSC0003DMT400060922	Potato	nucleus	40.24	63.06
KRG93068	Soybean	nucleus	66.19	62.61
Zm00001d028936_P001	Maize	nucleus	58.1	62.4
Solyc10g080780.1.1	Tomato	cytosol	39.76	62.08
VIT_13s0084g00660.t01	Wine grape	nucleus	68.81	61.62
KRH20680	Soybean	nucleus	67.38	60.34
PGSC0003DMT400060926	Potato	nucleus	61.43	59.58
KRG95103	Soybean	nucleus	64.05	58.61
KRH66771	Soybean	nucleus	64.05	58.48
Solyc10g080770.1.1	Tomato	nucleus	62.38	58.22
KRH13334	Soybean	nucleus	65.71	55.53
Zm00001d023424_P001	Maize	nucleus	40.71	55.16
Zm00001d043153_P001	Maize	nucleus	54.29	54.03
Zm00001d012553_P003	Maize	nucleus	58.33	52.13
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	41.43	51.33
Zm00001d037317_P003	Maize	nucleus	49.52	48.15
Zm00001d016312_P001	Maize	cytosol	10.48	47.31
Zm00001d026398_P006	Maize	nucleus	39.76	40.53
Zm00001d015845_P001	Maize	cytosol	25.24	39.41
Zm00001d052543_P001	Maize	nucleus	45.24	39.09
Zm00001d005143_P001	Maize	nucleus	37.38	38.2
Zm00001d024160_P003	Maize	nucleus	37.86	37.5
Zm00001d041428_P001	Maize	cytosol	13.81	37.18
Zm00001d002143_P002	Maize	cytosol	38.57	36.9
Zm00001d020938_P002	Maize	nucleus	42.38	36.63
Zm00001d006027_P002	Maize	nucleus	40.71	34.0
Zm00001d038296_P001	Maize	nucleus	41.43	33.53
Zm00001d012294_P009	Maize	nucleus	42.86	32.43
Zm00001d046751_P001	Maize	nucleus	34.76	31.88
Zm00001d042777_P006	Maize	nucleus	45.24	29.23
Zm00001d015846_P001	Maize	nucleus	12.14	25.25
Zm00001d045823_P001	Maize	cytosol	15.24	21.19

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	UniProt:A0A1D6FB04	ProteinID:AQK89229.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF244	SMART:SM00338
SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0008457D18	EnsemblPlantsGene:Zm00001d008225	EnsemblPlants:Zm00001d008225_P001	EnsemblPlants:Zm00001d008225_T001
InterPro:bZIP	SEG:seg	:	:	:	:

Description

bZIP-transcription factor 72Transcription factor TGA6

Coordinates

chr8:-:1785019..1794777

Molecular Weight (calculated)

46998.2 Da

IEP (calculated)

9.693

GRAVY (calculated)

-0.416

Length

420 amino acids

Sequence
(BLAST)

001: MIRGKASHNL KCYGKQLSTA LNIPKDLALK GKQLFTCLNL DLWFLLVIRS IFTIFRSNID IMSLDMFHFN KQIVLSDFPG GHILRTEVTM ADASPRTETS
101: TDDTDDNNGL EPGRGGLVAS DSSDRSKDKH GDQKVQTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGIFISSSV DQSHSMSGNG
201: ALAFDMEYAR WLEEHNRQIS ELRAGVSAHA SDTDLRSVVD KIMSHYDEIF RLKGNAAKAD VFHVLSGMWK TPAERCFLWL GGFRPSEVLK LLSTQLEPLT
301: EQQLSGISNL QQSSQQAEDA LSQGMEALQQ SLAETLAGSL SSSGSTGNVA NYMGQMAMAM GKLGTLENFL RQADNLRLQT LQQMQRILTT RQSARALLVI
401: SDYSSRLRAL SSLWLARPKE

Best Arabidopsis Sequence Match ( AT3G12250.4 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGFYYLYNVT PGRLVPESLG KTWGILPSDR GHMHAAASDS SDRSKDKLDQ KTLRRLAQNR EAARKSRLRK KAYVQQLENS
101: RLKLTQLEQE LQRARQQGVF ISSSGDQAHS TGGNGALAFD AEHSRWLEEK NRQMNELRSA LNAHAGDTEL RIIVDGVMAH YEELFRIKSN AAKNDVFHLL
201: SGMWKTPAER CFLWLGGFRS SELLKLLANQ LEPMTERQVM GINSLQQTSQ QAEDALSQGM ESLQQSLADT LSSGTLGSSS SDNVASYMGQ MAMAMGQLGT
301: LEGFIRQADN LRLQTLQQML RVLTTRQSAR ALLAIHDYSS RLRALSSLWL ARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.