Factsheet for VIT_08s0007g05170.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05800_001	Banana	nucleus	64.08	87.05
GSMUA_Achr3P25020_001	Banana	nucleus	63.64	86.45
EES02530	Sorghum	nucleus	61.64	84.24
Os01t0279900-01	Rice	nucleus	61.2	83.89
TraesCS3A01G190700.2	Wheat	nucleus	60.98	82.83
TraesCS3B01G220400.2	Wheat	nucleus	60.98	82.83
TraesCS3D01G194800.2	Wheat	nucleus	60.98	82.83
HORVU3Hr1G042790.4	Barley	nucleus	60.75	82.78
KXG39494	Sorghum	nucleus	60.75	81.79
Os03t0318600-01	Rice	nucleus	60.09	81.38
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	26.61	80.54
TraesCS4A01G126300.2	Wheat	nucleus	59.65	80.3
TraesCS4D01G180200.4	Wheat	nucleus	59.65	80.3
HORVU4Hr1G052330.3	Barley	nucleus	59.42	80.24
TraesCS4B01G178600.1	Wheat	nucleus	59.42	80.24
KXG36997	Sorghum	nucleus	58.76	79.58
Zm00001d022542_P002	Maize	nucleus	58.54	79.28
TraesCS2B01G113200.2	Wheat	nucleus	58.76	78.87
Os07t0687700-01	Rice	nucleus	58.31	78.74
TraesCS2D01G096800.2	Wheat	nucleus	58.54	78.57
TraesCS2A01G097500.2	Wheat	nucleus	58.31	78.27
VIT_13s0084g00660.t01	Wine grape	nucleus	79.82	76.76
KRG95103	Soybean	nucleus	77.38	76.03
KRH66777	Soybean	nucleus	48.56	75.52
KRH66771	Soybean	nucleus	76.94	75.43
HORVU2Hr1G016580.5	Barley	nucleus	55.88	74.78
GSMUA_Achr10P...	Banana	nucleus	74.28	73.3
PGSC0003DMT400060926	Potato	nucleus	69.4	72.29
Solyc10g080770.1.1	Tomato	nucleus	71.84	72.0
KXG22247	Sorghum	nucleus	52.33	71.08
GSMUA_Achr11P...	Banana	nucleus	72.73	68.62
EES03778	Sorghum	nucleus	71.18	68.59
Zm00001d008225_P001	Maize	nucleus	63.64	68.33
TraesCS3A01G334100.1	Wheat	nucleus	70.95	67.37
HORVU3Hr1G079010.5	Barley	nucleus	71.18	67.3
Solyc10g080780.1.1	Tomato	cytosol	40.13	67.29
PGSC0003DMT400060922	Potato	nucleus	39.91	67.16
Os05t0492000-00	Rice	nucleus	49.0	66.97
TraesCS3B01G365100.1	Wheat	nucleus	70.73	66.88
TraesCS3D01G327600.1	Wheat	nucleus	70.73	66.88
VIT_01s0011g03230.t01	Wine grape	nucleus	64.97	64.68
Zm00001d028936_P001	Maize	nucleus	55.65	64.19
Zm00001d010658_P001	Maize	nucleus	48.78	63.77
Zm00001d043153_P001	Maize	nucleus	59.65	63.74
TraesCS1A01G096300.1	Wheat	nucleus	45.68	61.49
Zm00001d012553_P003	Maize	nucleus	63.41	60.85
TraesCS1B01G127400.1	Wheat	nucleus	45.23	60.0
TraesCS1D01G105300.1	Wheat	nucleus	44.79	59.59
Os01t0808100-01	Rice	nucleus	46.78	57.97
VIT_07s0031g01320.t01	Wine grape	nucleus	42.79	55.3
HORVU1Hr1G068220.1	Barley	nucleus	41.69	54.81
VIT_18s0001g04470.t01	Wine grape	nucleus	42.79	53.17
VIT_08s0007g06160.t01	Wine grape	nucleus	47.23	43.38
VIT_06s0080g00360.t01	Wine grape	nucleus	47.23	42.6
HORVU0Hr1G032230.4	Barley	nucleus	32.37	41.6

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100252149	wikigene:100252149	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2
ProteinID:CBI30127	ProteinID:CBI30127.3	ncoils:Coil	UniProt:D7TIQ1	EMBL:FN595991	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	EntrezGene:LOC100252149	wikigene:LOC100252149	PFAM:PF00170	PFAM:PF14144
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF244	SMART:SM00338
SUPFAM:SSF57959	TIGR:TC53077	TIGR:TC57280	InterPro:TGA_domain	UniParc:UPI0001BE3720	ArrayExpress:VIT_08s0007g05170
EnsemblPlantsGene:VIT_08s0007g05170	EnsemblPlants:VIT_08s0007g05170.t01	unigene:Vvi.3311	RefSeq:XP_003632741	RefSeq:XP_003632741.1	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:19088004..19098613

Molecular Weight (calculated)

49912.7 Da

IEP (calculated)

8.451

GRAVY (calculated)

-0.576

Length

451 amino acids

Sequence
(BLAST)

001: MGSRTVKVGA EDVSKVTPGM PSFIPQIPIS NSIGTEGNNI RSRISDFGAL EQSLGFRIED AVDLSRNSVF NSAKPSSQAP STDLQFGALN KTSTVQKELQ
101: QNIASVSGSH RENWGESNMA DASPRTDTST DVDTDEKNQR FEMGQSAALV ASDSSDRSKE KAGDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRMKLT
201: QLEQELQRAR QQGIFISSSG DQSHSMSGNG ALAFDVEYAR WLEEHNRQIN ELRSAVNSHA SDTELRTIVD NVTAHFDDIF RLKGIAAKAD VFHILSGMWK
301: TPAERCFMWI GGFRSSEVLK LLVNQLEPLT EQQLMSIYNL QQSSQQAEDA LSQGMEALQQ SLAETLTSGS PGPSGSSGNV ANYMGQMAMA MGKLGTLEGF
401: LRQADNLRQQ TLQQMHRILT TRQSARALLA INDYFSRLRA LSSLWLARPR E

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.