Factsheet for HORVU4Hr1G052330.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G003840.1
HORVU0Hr1G032230.4
HORVU1Hr1G068220.1
HORVU2Hr1G016580.5
HORVU3Hr1G019230.6
HORVU3Hr1G042790.4
HORVU3Hr1G042830.1
HORVU3Hr1G079010.5
HORVU3Hr1G106880.5
HORVU4Hr1G052330.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	10659709
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	10662863
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	12383081
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	15634206
AT5G06960.1	HORVU3Hr1G106880.5	AT2G41370.1	21798944
AT5G06960.1	HORVU0Hr1G003840.1	AT3G02000.1	19218396
AT5G06960.1	HORVU0Hr1G032230.4	AT5G06960.1	17098811
AT5G06960.1	HORVU1Hr1G068220.1	AT5G06960.1	17098811
AT5G06960.1	HORVU2Hr1G016580.5	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G042790.4	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G042830.1	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G079010.5	AT5G06960.1	17098811
AT5G06960.1	HORVU4Hr1G052330.3	AT5G06960.1	17098811
AT5G06960.1	HORVU0Hr1G032230.4	AT5G06960.1	21798944
AT5G06960.1	HORVU1Hr1G068220.1	AT5G06960.1	21798944
AT5G06960.1	HORVU2Hr1G016580.5	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G042790.4	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G042830.1	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G079010.5	AT5G06960.1	21798944
AT5G06960.1	HORVU4Hr1G052330.3	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G178600.1	Wheat	nucleus	100.0	100.0
TraesCS4D01G180200.4	Wheat	nucleus	99.7	99.4
TraesCS4A01G126300.2	Wheat	nucleus	99.7	99.4
KXG39494	Sorghum	nucleus	94.61	94.33
Os03t0318600-01	Rice	nucleus	93.71	93.99
HORVU2Hr1G016580.5	Barley	nucleus	85.63	84.87
KRH36324	Soybean	nucleus	81.14	81.63
PGSC0003DMT400024428	Potato	nucleus	78.44	80.86
Solyc11g064950.1.1	Tomato	nucleus	78.44	80.86
HORVU3Hr1G042790.4	Barley	nucleus	77.84	78.55
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	35.03	78.52
Solyc01g008730.2.1	Tomato	nucleus	75.45	77.06
CDY08443	Canola	nucleus	73.95	74.62
Bra009241.1-P	Field mustard	nucleus	69.16	74.52
Bra034767.1-P	Field mustard	nucleus	73.65	74.32
AT5G06950.5	Thale cress	nucleus	73.35	74.24
CDX73830	Canola	nucleus	73.35	74.02
Bra001443.1-P	Field mustard	nucleus	73.35	74.02
PGSC0003DMT400026710	Potato	mitochondrion	38.92	73.86
CDY00762	Canola	nucleus	73.05	73.72
CDY50562	Canola	nucleus	73.65	73.65
Bra038705.1-P	Field mustard	nucleus	73.65	73.65
CDY52616	Canola	nucleus	73.35	73.57
CDX70053	Canola	nucleus	71.26	72.78
CDX98971	Canola	nucleus	71.26	72.56
Zm00001d028936_P001	Maize	nucleus	82.63	70.59
AT5G06960.1	Thale cress	nucleus	69.46	70.3
CDY05010	Canola	nucleus	67.96	69.63
CDY14061	Canola	nucleus	67.66	69.33
Bra028713.1-P	Field mustard	nucleus	67.66	69.33
AT3G12250.4	Thale cress	nucleus	73.35	69.01
KRH66777	Soybean	nucleus	59.58	68.62
CDY42138	Canola	nucleus	62.87	64.81
PGSC0003DMT400060922	Potato	nucleus	50.6	63.06
Solyc10g080780.1.1	Tomato	cytosol	50.3	62.45
KRG93068	Soybean	nucleus	80.54	60.59
VIT_08s0007g05170.t01	Wine grape	nucleus	80.24	59.42
VIT_13s0084g00660.t01	Wine grape	nucleus	82.63	58.85
PGSC0003DMT400060926	Potato	nucleus	74.85	57.74
KRH20680	Soybean	nucleus	79.64	56.72
Solyc10g080770.1.1	Tomato	nucleus	74.85	55.56
KRG95103	Soybean	nucleus	76.05	55.34
HORVU3Hr1G079010.5	Barley	nucleus	78.74	55.14
KRH66771	Soybean	nucleus	75.75	55.0
HORVU1Hr1G068220.1	Barley	nucleus	55.39	53.94
KRH13334	Soybean	nucleus	79.64	53.52
HORVU7Hr1G042180.5	Barley	nucleus	60.18	53.32
HORVU4Hr1G025130.10	Barley	nucleus	56.29	51.79
GSMUA_Achr8P21670_001	Banana	nucleus	80.84	46.39
HORVU0Hr1G032230.4	Barley	nucleus	44.31	42.17
HORVU2Hr1G116130.4	Barley	nucleus	16.47	41.35
HORVU0Hr1G015710.1	Barley	nucleus	42.81	31.09
HORVU1Hr1G073870.2	Barley	nucleus	48.2	30.78
HORVU5Hr1G053330.5	Barley	nucleus	44.31	29.37
HORVU5Hr1G073410.1	Barley	nucleus	48.2	28.4
HORVU2Hr1G116090.2	Barley	cytosol	32.63	25.77
HORVU3Hr1G084340.10	Barley	nucleus	31.74	18.63

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:HORVU4Hr1G052330	EnsemblPlants:HORVU4Hr1G052330.3	InterPro:IPR004827	InterPro:IPR025422	UniProt:M0XXS7	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF220
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000296CDC7	InterPro:bZIP	SEG:seg

Description

No Description!

Coordinates

chrchr4H:-:433076492..433080697

Molecular Weight (calculated)

37270.4 Da

IEP (calculated)

8.459

GRAVY (calculated)

-0.513

Length

334 amino acids

Sequence
(BLAST)

001: MADASSRTDT SIVVDTDDKN QRMENGQNGA IVPSNSSEPS DRSDRPMDQK VLRRLAQNRE AARKSRLRKK AYVQQLESSK LKLASLEQEL QKARQQGIFI
101: SSSGDQTHAM SGNGAMTFDL EYTRWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEIFKLKGAA AKADVFHMLS GMWKTPAERC FLWLGGFRSS
201: ELLKLLVNQL EPLTEQQLMG LSSLEQSSHQ AEDALSQGME ALQQSLAETL AGSLGPSGSS GNVANYMGQM AMAMGKLGTL ENFLRQADNL RQQTLHQMQR
301: ILTIRQAARA LLAIHDYFSR LRALSSLWLA RPRE

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.