Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G003840.1 | |
| HORVU3Hr1G019230.6 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016312_P001 | Maize | cytosol | 16.08 | 73.12 |
| TraesCS2A01G526300.1 | Wheat | nucleus | 50.59 | 51.07 |
| TraesCS2D01G529000.1 | Wheat | nucleus | 51.3 | 51.06 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 51.77 | 50.34 |
| HORVU3Hr1G042830.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 16.55 | 46.98 |
| KXG27222 | Sorghum | nucleus | 42.32 | 43.87 |
| KRH63045 | Soybean | cytosol | 9.46 | 42.55 |
| Zm00001d026398_P006 | Maize | nucleus | 41.13 | 42.23 |
| Zm00001d002143_P002 | Maize | cytosol | 43.03 | 41.46 |
| Os04t0637000-01 | Rice | nucleus | 38.06 | 40.55 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 33.33 | 38.63 |
| Zm00001d041428_P001 | Maize | cytosol | 13.71 | 37.18 |
| VIT_07s0031g01320.t01 | Wine grape | nucleus | 30.02 | 36.39 |
| VIT_18s0001g04470.t01 | Wine grape | nucleus | 30.5 | 35.54 |
| AT5G10030.3 | Thale cress | nucleus | 30.5 | 35.44 |
| Bra015646.1-P | Field mustard | nucleus | 27.9 | 34.81 |
| Solyc12g056860.1.1 | Tomato | nucleus | 28.61 | 34.77 |
| KRG97639 | Soybean | nucleus | 29.55 | 34.53 |
| Bra024366.1-P | Field mustard | nucleus | 29.79 | 34.33 |
| CDY08810 | Canola | nucleus | 29.79 | 34.33 |
| CDY37811 | Canola | nucleus | 30.02 | 34.32 |
| CDY33975 | Canola | nucleus | 30.02 | 34.32 |
| HORVU3Hr1G042790.4 | Barley | nucleus | 26.71 | 34.14 |
| CDY14552 | Canola | nucleus | 29.55 | 34.06 |
| Bra031871.1-P | Field mustard | nucleus | 29.79 | 34.05 |
| Solyc04g072460.2.1 | Tomato | nucleus | 28.84 | 33.8 |
| Bra009063.1-P | Field mustard | nucleus | 29.08 | 33.79 |
| CDX69866 | Canola | nucleus | 29.08 | 33.79 |
| KRH31239 | Soybean | nucleus | 29.08 | 33.79 |
| Bra028604.1-P | Field mustard | nucleus | 28.61 | 33.43 |
| CDY40074 | Canola | nucleus | 28.61 | 33.43 |
| CDX85782 | Canola | nucleus | 28.61 | 33.43 |
| PGSC0003DMT400070884 | Potato | nucleus | 28.37 | 33.24 |
| CDY21625 | Canola | nucleus | 28.37 | 32.97 |
| AT5G65210.2 | Thale cress | nucleus | 28.61 | 32.88 |
| PGSC0003DMT400033308 | Potato | nucleus | 27.66 | 32.87 |
| PGSC0003DMT400043651 | Potato | nucleus | 27.9 | 32.69 |
| HORVU4Hr1G052330.3 | Barley | nucleus | 25.77 | 32.63 |
| CDX68037 | Canola | nucleus | 28.61 | 32.61 |
| AT1G77920.1 | Thale cress | nucleus | 28.37 | 32.61 |
| CDY18683 | Canola | cytosol | 28.61 | 32.53 |
| Solyc04g054320.2.1 | Tomato | nucleus | 27.9 | 31.89 |
| Solyc04g011670.2.1 | Tomato | nucleus | 28.13 | 31.82 |
| KRH53141 | Soybean | nucleus | 26.48 | 31.55 |
| HORVU2Hr1G016580.5 | Barley | nucleus | 25.06 | 31.45 |
| Bra031364.1-P | Field mustard | nucleus | 27.9 | 31.22 |
| CDX81273 | Canola | nucleus | 28.61 | 31.11 |
| KRG92164 | Soybean | nucleus | 17.26 | 31.06 |
| CDY38253 | Canola | nucleus | 28.13 | 30.91 |
| KRH43266 | Soybean | nucleus | 27.66 | 30.87 |
| CDY38843 | Canola | nucleus | 26.95 | 30.81 |
| AT1G22070.1 | Thale cress | nucleus | 27.9 | 30.73 |
| Bra016389.1-P | Field mustard | nucleus | 26.71 | 30.71 |
| CDY41495 | Canola | nucleus | 26.71 | 30.62 |
| KRH59415 | Soybean | nucleus | 26.71 | 30.54 |
| KRH64780 | Soybean | nucleus | 25.77 | 30.11 |
| KRH16629 | Soybean | nucleus | 26.24 | 30.0 |
| KRH18838 | Soybean | nucleus | 26.0 | 29.73 |
| PGSC0003DMT400016235 | Potato | nucleus | 27.42 | 29.59 |
| KRH34622 | Soybean | cytosol | 16.08 | 29.44 |
| HORVU7Hr1G042180.5 | Barley | nucleus | 25.77 | 28.91 |
| CDY21336 | Canola | nucleus | 28.37 | 28.71 |
| HORVU4Hr1G025130.10 | Barley | nucleus | 24.35 | 28.37 |
| Bra037809.1-P | Field mustard | nucleus | 26.0 | 28.06 |
| CDX88399 | Canola | nucleus | 28.13 | 27.67 |
| HORVU1Hr1G068220.1 | Barley | nucleus | 22.22 | 27.41 |
| CDX87494 | Canola | nucleus | 28.37 | 27.03 |
| HORVU3Hr1G079010.5 | Barley | nucleus | 26.95 | 23.9 |
| HORVU0Hr1G015710.1 | Barley | nucleus | 20.8 | 19.13 |
| HORVU1Hr1G073870.2 | Barley | nucleus | 23.4 | 18.93 |
| HORVU5Hr1G073410.1 | Barley | nucleus | 25.06 | 18.69 |
| HORVU0Hr1G032230.4 | Barley | nucleus | 14.66 | 17.66 |
| Bra037374.1-P | Field mustard | nucleus | 13.0 | 17.52 |
| CDX79240 | Canola | nucleus | 23.17 | 17.19 |
| HORVU5Hr1G053330.5 | Barley | nucleus | 19.39 | 16.27 |
| HORVU3Hr1G084340.10 | Barley | nucleus | 14.66 | 10.9 |
| HORVU2Hr1G116130.4 | Barley | nucleus | 2.6 | 8.27 |
Protein Annotations
| MapMan:15.5.4.7.1 | UniProt:A0A287JJQ0 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:HORVU2Hr1G116090 | EnsemblPlants:HORVU2Hr1G116090.2 | InterPro:IPR025422 | PFAM:PF14144 |
| PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF180 | InterPro:TGA_domain | UniParc:UPI000B473879 | SEG:seg |
Description
No Description!
Coordinates
chrchr2H:-:736783829..736789669
Molecular Weight (calculated)
26066.4 Da
IEP (calculated)
5.326
GRAVY (calculated)
-0.100
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MELYPGYLED XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: QMMDPGVAAF EIKYGHWVDE QKRHTEQLRS ALQQGQGTSE LELQMMVETG LANYDDLFRI KGAAAQSDVF CVMSGLWRSP AERFFLWIGG FRPSEVLKIL
301: SPQLHPMTEA QSVAVYGLQL TSAQAEDALS QGMQKLQQTL AESLTDPFAA PDAYMVGAVE KLKGLVGFVQ QADHLRLETL QNMHRILTTR QAAKGLLVLG
401: DYFQRLRALS TLWAARPRES AIS
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: QMMDPGVAAF EIKYGHWVDE QKRHTEQLRS ALQQGQGTSE LELQMMVETG LANYDDLFRI KGAAAQSDVF CVMSGLWRSP AERFFLWIGG FRPSEVLKIL
301: SPQLHPMTEA QSVAVYGLQL TSAQAEDALS QGMQKLQQTL AESLTDPFAA PDAYMVGAVE KLKGLVGFVQ QADHLRLETL QNMHRILTTR QAAKGLLVLG
401: DYFQRLRALS TLWAARPRES AIS
001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
Arabidopsis Description
TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.