Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016389.1-P | Field mustard | nucleus | 98.37 | 98.64 |
| CDY38843 | Canola | nucleus | 96.48 | 96.22 |
| CDY38253 | Canola | nucleus | 89.43 | 85.71 |
| AT1G22070.1 | Thale cress | nucleus | 87.26 | 83.85 |
| CDY21336 | Canola | nucleus | 89.7 | 79.19 |
| CDX68037 | Canola | nucleus | 70.73 | 70.35 |
| VIT_18s0001g04470.t01 | Wine grape | nucleus | 63.14 | 64.19 |
| CDX88399 | Canola | nucleus | 72.09 | 61.86 |
| CDX87494 | Canola | nucleus | 71.82 | 59.68 |
| Solyc04g072460.2.1 | Tomato | nucleus | 57.18 | 58.45 |
| PGSC0003DMT400070884 | Potato | nucleus | 56.91 | 58.17 |
| Solyc12g056860.1.1 | Tomato | nucleus | 54.74 | 58.05 |
| PGSC0003DMT400043651 | Potato | nucleus | 56.37 | 57.62 |
| KRH63045 | Soybean | cytosol | 14.63 | 57.45 |
| CDY08810 | Canola | nucleus | 56.91 | 57.22 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 56.1 | 56.71 |
| CDY33975 | Canola | nucleus | 56.37 | 56.22 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.93 | 56.21 |
| CDY14552 | Canola | nucleus | 55.83 | 56.13 |
| CDY37811 | Canola | nucleus | 56.1 | 55.95 |
| CDX85782 | Canola | nucleus | 54.47 | 55.52 |
| CDY40074 | Canola | nucleus | 54.2 | 55.25 |
| GSMUA_Achr10P... | Banana | nucleus | 52.3 | 54.99 |
| KRH53141 | Soybean | nucleus | 52.3 | 54.37 |
| CDY18683 | Canola | cytosol | 54.74 | 54.3 |
| CDX81273 | Canola | nucleus | 56.1 | 53.21 |
| CDX69866 | Canola | nucleus | 52.03 | 52.75 |
| KRH18838 | Soybean | nucleus | 52.85 | 52.7 |
| KRH64780 | Soybean | nucleus | 51.49 | 52.49 |
| KRH16629 | Soybean | nucleus | 52.57 | 52.43 |
| CDY05010 | Canola | nucleus | 45.53 | 51.53 |
| CDY14061 | Canola | nucleus | 45.53 | 51.53 |
| CDY21625 | Canola | nucleus | 50.68 | 51.37 |
| CDY08443 | Canola | nucleus | 45.8 | 51.06 |
| CDX70053 | Canola | nucleus | 44.99 | 50.76 |
| CDX98971 | Canola | nucleus | 44.99 | 50.61 |
| CDY50562 | Canola | nucleus | 45.53 | 50.3 |
| CDY00762 | Canola | nucleus | 44.99 | 50.15 |
| CDX73830 | Canola | nucleus | 44.99 | 50.15 |
| CDY52616 | Canola | nucleus | 45.26 | 50.15 |
| Zm00001d016312_P001 | Maize | cytosol | 11.65 | 46.24 |
| CDY71150 | Canola | nucleus, plastid | 24.39 | 45.45 |
| CDY70396 | Canola | mitochondrion | 25.47 | 44.98 |
| Os04t0637000-01 | Rice | nucleus | 48.24 | 44.84 |
| KXG27222 | Sorghum | nucleus | 47.15 | 42.65 |
| CDY42138 | Canola | nucleus | 37.13 | 42.28 |
| CDX79240 | Canola | nucleus | 63.69 | 41.23 |
| TraesCS2A01G526300.1 | Wheat | nucleus | 46.61 | 41.05 |
| TraesCS2D01G529000.1 | Wheat | nucleus | 47.15 | 40.94 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 47.97 | 40.69 |
| Zm00001d026398_P006 | Maize | nucleus | 44.99 | 40.29 |
| KXG38496 | Sorghum | nucleus | 33.88 | 40.19 |
| Zm00001d024160_P003 | Maize | nucleus | 44.72 | 38.92 |
| CDY22689 | Canola | nucleus | 44.72 | 38.55 |
| CDY70714 | Canola | nucleus | 35.77 | 37.5 |
| CDY70235 | Canola | nucleus | 36.31 | 36.81 |
| Zm00001d002143_P002 | Maize | cytosol | 43.63 | 36.67 |
| CDY00417 | Canola | mitochondrion | 23.04 | 36.64 |
| CDX70061 | Canola | nucleus | 44.72 | 36.59 |
| CDX98963 | Canola | nucleus | 44.44 | 36.36 |
| CDX95999 | Canola | nucleus | 43.36 | 36.2 |
| CDY38608 | Canola | nucleus | 42.82 | 35.75 |
| CDX95068 | Canola | nucleus | 45.26 | 34.94 |
| CDX93571 | Canola | nucleus | 44.99 | 34.73 |
| Zm00001d041428_P001 | Maize | cytosol | 14.63 | 34.62 |
| Os08t0176900-01 | Rice | nucleus | 36.31 | 34.45 |
| CDY06309 | Canola | nucleus | 44.99 | 34.3 |
| OQU79985 | Sorghum | golgi, vacuole | 45.26 | 32.36 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 30.62 | 26.71 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | GO:A0A078HSC1 | UniProt:A0A078HSC1 | EnsemblPlants:CDY41495 |
| ProteinID:CDY41495 | ProteinID:CDY41495.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00073107001 | InterPro:IPR004827 |
| InterPro:IPR025422 | PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF180 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI0004EE9399 |
| InterPro:bZIP | SEG:seg | : | : | : | : |
Description
BnaA08g20970DBnaA08g20970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSC1]
Coordinates
chrLK032498:-:266153..267918
Molecular Weight (calculated)
41753.2 Da
IEP (calculated)
7.029
GRAVY (calculated)
-0.617
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSSSSSNTQ AVPFRDMAMY EPFQQLTGWD NTFNTITSNN HNNNNQTSST VARTEADDNN KGNYTSLYNN SVEAEPSSNN DQGEVQINDK TKRRLAQNRE
101: AARKSRLRKK AHVQQLEESR LKLSQLEQEL VRARQQGLCV TSDATYLGPA GTMNTGIAAF EMEHKHWLEE QNKRVSEIRT ALQAHISDVE LKMLVDVCLN
201: HYANLFRMKA DAAKADVFFL ISGMWRTSTE RFFQWIGGFR PSELLNVVMP YIEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE NIAVVESLNH
301: GGAQMASAME NLESLEGFVN QADHLRKQSL QQMSKVLTTR QAARGLLALG EYFHRLRALS SLWAARPRN
101: AARKSRLRKK AHVQQLEESR LKLSQLEQEL VRARQQGLCV TSDATYLGPA GTMNTGIAAF EMEHKHWLEE QNKRVSEIRT ALQAHISDVE LKMLVDVCLN
201: HYANLFRMKA DAAKADVFFL ISGMWRTSTE RFFQWIGGFR PSELLNVVMP YIEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE NIAVVESLNH
301: GGAQMASAME NLESLEGFVN QADHLRKQSL QQMSKVLTTR QAARGLLALG EYFHRLRALS SLWAARPRN
001: MEMMSSSSST TQVVSFRDMG MYEPFQQLSG WESPFKSDIN NITSNQNNNQ SSSTTLEVDA RPEADDNNRV NYTSVYNNSL EAEPSSNNDQ DEDRINDKMK
101: RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE
201: LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE
301: SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT
101: RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE
201: LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE
301: SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT
Arabidopsis Description
TGA3At1g22070 [Source:UniProtKB/TrEMBL;Acc:Q147Q9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.