Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031364.1-P | Field mustard | nucleus | 89.06 | 90.48 |
| CDY38253 | Canola | nucleus | 89.06 | 88.83 |
| CDY41495 | Canola | nucleus | 83.85 | 87.26 |
| Bra016389.1-P | Field mustard | nucleus | 83.33 | 86.96 |
| CDY38843 | Canola | nucleus | 82.81 | 85.95 |
| CDY21336 | Canola | nucleus | 89.58 | 82.3 |
| AT1G77920.1 | Thale cress | nucleus | 72.92 | 76.09 |
| VIT_18s0001g04470.t01 | Wine grape | nucleus | 64.32 | 68.04 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 57.55 | 60.55 |
| Solyc04g072460.2.1 | Tomato | nucleus | 56.77 | 60.39 |
| PGSC0003DMT400070884 | Potato | nucleus | 56.51 | 60.11 |
| AT5G65210.2 | Thale cress | nucleus | 57.55 | 60.05 |
| AT5G10030.3 | Thale cress | nucleus | 56.51 | 59.62 |
| Solyc12g056860.1.1 | Tomato | nucleus | 53.65 | 59.2 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.91 | 58.47 |
| PGSC0003DMT400043651 | Potato | nucleus | 54.43 | 57.89 |
| GSMUA_Achr10P... | Banana | nucleus | 52.86 | 57.83 |
| KRH63045 | Soybean | cytosol | 14.06 | 57.45 |
| KRH53141 | Soybean | nucleus | 50.78 | 54.93 |
| KRH18838 | Soybean | nucleus | 51.82 | 53.78 |
| KRH64780 | Soybean | nucleus | 50.52 | 53.59 |
| KRH16629 | Soybean | nucleus | 51.3 | 53.24 |
| AT5G06950.5 | Thale cress | nucleus | 44.01 | 51.21 |
| AT5G06960.1 | Thale cress | nucleus | 43.49 | 50.61 |
| Zm00001d016312_P001 | Maize | cytosol | 11.72 | 48.39 |
| Os04t0637000-01 | Rice | nucleus | 49.22 | 47.61 |
| AT3G12250.4 | Thale cress | nucleus | 43.75 | 47.32 |
| KXG27222 | Sorghum | nucleus | 47.66 | 44.85 |
| TraesCS2A01G526300.1 | Wheat | nucleus | 47.4 | 43.44 |
| TraesCS2D01G529000.1 | Wheat | nucleus | 47.66 | 43.06 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 48.44 | 42.76 |
| Zm00001d026398_P006 | Maize | nucleus | 45.57 | 42.48 |
| KXG38496 | Sorghum | nucleus | 33.59 | 41.48 |
| Zm00001d024160_P003 | Maize | nucleus | 44.79 | 40.57 |
| Zm00001d002143_P002 | Maize | cytosol | 44.27 | 38.72 |
| AT5G06839.3 | Thale cress | nucleus | 45.05 | 37.61 |
| Zm00001d041428_P001 | Maize | cytosol | 15.1 | 37.18 |
| AT1G68640.1 | Thale cress | nucleus | 43.75 | 37.17 |
| AT1G08320.4 | Thale cress | nucleus | 45.31 | 36.17 |
| Os08t0176900-01 | Rice | nucleus | 36.2 | 35.73 |
| OQU79985 | Sorghum | golgi, vacuole | 45.05 | 33.53 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 30.73 | 27.9 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | EntrezGene:838812 | ProteinID:AAF86550.1 | ProteinID:AEE30193.1 |
| ArrayExpress:AT1G22070 | EnsemblPlantsGene:AT1G22070 | RefSeq:AT1G22070 | TAIR:AT1G22070 | RefSeq:AT1G22070-TAIR-G | EnsemblPlants:AT1G22070.1 |
| TAIR:AT1G22070.1 | EMBL:AY087225 | EMBL:BT026034 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005516 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008219 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009626 | GO:GO:0009719 |
| GO:GO:0009862 | GO:GO:0009987 | GO:GO:0042742 | GO:GO:0043565 | InterPro:IPR004827 | InterPro:IPR025422 |
| EMBL:L10209 | RefSeq:NP_564156.1 | PFAM:PF07716 | PFAM:PF14144 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00036 | PFscan:PS50217 |
| PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF180 | UniProt:Q147Q9 | UniProt:Q39234 | SMART:SM00338 |
| SUPFAM:SSF57959 | Symbol:TGA3 | InterPro:TGA_domain | UniParc:UPI00000A4DF9 | InterPro:bZIP | SEG:seg |
Description
TGA3At1g22070 [Source:UniProtKB/TrEMBL;Acc:Q147Q9]
Coordinates
chr1:+:7789133..7792139
Molecular Weight (calculated)
43757.6 Da
IEP (calculated)
6.127
GRAVY (calculated)
-0.635
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMMSSSSST TQVVSFRDMG MYEPFQQLSG WESPFKSDIN NITSNQNNNQ SSSTTLEVDA RPEADDNNRV NYTSVYNNSL EAEPSSNNDQ DEDRINDKMK
101: RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE
201: LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE
301: SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT
101: RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE
201: LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE
301: SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.