Factsheet for Solyc12g056860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009890.1.1
Solyc01g009900.2.1
Solyc01g009910.1.1
Solyc05g015910.1.1
Solyc07g040690.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	Solyc07g040690.2.1	AT1G64280.1	10659709
AT1G22070.1	Solyc07g040690.2.1	AT1G64280.1	10662863
AT1G22070.1	Solyc07g040690.2.1	AT1G64280.1	15634206
AT1G22070.1	Solyc07g040690.2.1	AT1G64280.1	21798944
AT1G22070.1	Solyc01g009890.1.1	AT3G02000.1	19218396
AT1G22070.1	Solyc01g009900.2.1	AT3G02000.1	19218396
AT1G22070.1	Solyc01g009910.1.1	AT3G02000.1	19218396
AT1G22070.1	Solyc05g015910.1.1	AT3G02000.1	19218396
AT1G77920.1	Solyc07g040690.2.1	AT1G64280.1	10662863
AT1G77920.1	Solyc07g040690.2.1	AT1G64280.1	15634206
AT1G77920.1	Solyc01g009890.1.1	AT3G02000.1	19218396
AT1G77920.1	Solyc01g009900.2.1	AT3G02000.1	19218396
AT1G77920.1	Solyc01g009910.1.1	AT3G02000.1	19218396
AT1G77920.1	Solyc05g015910.1.1	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043651	Potato	nucleus	97.7	94.18
Solyc04g072460.2.1	Tomato	nucleus	84.77	81.72
VIT_18s0001g04470.t01	Wine grape	nucleus	67.53	64.74
KRH63045	Soybean	cytosol	16.95	62.77
GSMUA_Achr5P16630_001	Banana	nucleus	62.36	59.45
Bra015646.1-P	Field mustard	nucleus	56.9	58.41
GSMUA_Achr10P...	Banana	nucleus	57.76	57.27
AT1G77920.1	Thale cress	nucleus	60.34	57.07
GSMUA_AchrUn_...	Banana	nucleus	58.05	57.06
CDX68037	Canola	nucleus	59.77	56.06
Zm00001d016312_P001	Maize	cytosol	14.94	55.91
Bra031364.1-P	Field mustard	nucleus	59.77	55.03
KRH53141	Soybean	nucleus	56.03	54.93
CDY38843	Canola	nucleus	58.33	54.86
CDY41495	Canola	nucleus	58.05	54.74
Bra016389.1-P	Field mustard	nucleus	57.76	54.62
KRH18838	Soybean	nucleus	58.05	54.59
CDY38253	Canola	nucleus	60.06	54.29
Solyc04g054320.2.1	Tomato	nucleus	57.47	54.05
KRH16629	Soybean	nucleus	57.18	53.78
Solyc11g064950.1.1	Tomato	nucleus	50.0	53.7
AT1G22070.1	Thale cress	nucleus	59.2	53.65
KRH64780	Soybean	nucleus	55.17	53.04
Solyc04g011670.2.1	Tomato	nucleus	56.61	52.67
Solyc01g008730.2.1	Tomato	nucleus	47.41	50.46
CDY21336	Canola	nucleus	60.06	50.0
CDX88399	Canola	nucleus	59.2	47.91
CDX87494	Canola	nucleus	60.06	47.07
Os04t0637000-01	Rice	nucleus	51.72	45.34
KXG27222	Sorghum	nucleus	52.87	45.1
Solyc10g080780.1.1	Tomato	cytosol	33.33	43.12
Zm00001d026398_P006	Maize	nucleus	50.86	42.96
TraesCS2D01G529000.1	Wheat	nucleus	51.15	41.88
KXG38496	Sorghum	nucleus	37.36	41.8
TraesCS2A01G526300.1	Wheat	nucleus	49.71	41.29
TraesCS2B01G556600.1	Wheat	nucleus	50.86	40.69
Zm00001d024160_P003	Maize	nucleus	49.14	40.33
Solyc11g068370.1.1	Tomato	nucleus	42.82	40.05
Solyc10g080770.1.1	Tomato	nucleus	50.57	39.11
Zm00001d041428_P001	Maize	cytosol	17.53	39.1
Zm00001d002143_P002	Maize	cytosol	49.14	38.95
Os08t0176900-01	Rice	nucleus	40.8	36.5
OQU79985	Sorghum	golgi, vacuole	50.57	34.11
Solyc05g009660.2.1	Tomato	nucleus	46.84	33.68
Solyc06g074320.2.1	Tomato	nucleus	45.69	31.74
CDX79240	Canola	nucleus	51.72	31.58
Solyc10g080410.1.1	Tomato	nucleus	41.38	31.37
Solyc10g078670.1.1	Tomato	nucleus	43.39	31.01
HORVU2Hr1G116090.2	Barley	cytosol	34.77	28.61

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	UniProt:K4DG17	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF180	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc12g056860.1
EnsemblPlants:Solyc12g056860.1.1	InterPro:TGA_domain	UniParc:UPI000276A1D9	InterPro:bZIP	:	:

Description

No Description!

Coordinates

chr12:-:62920351..62922585

Molecular Weight (calculated)

39561.6 Da

IEP (calculated)

7.116

GRAVY (calculated)

-0.392

Length

348 amino acids

Sequence
(BLAST)

001: MGIFEPFHHM SMWEDAFRGD IMPSVGACMI TPANDRADDK SGYTSSDQLI PSGSEDNQAG KSISDKVQRR LAQNREAARK SRMRKKAYVQ QLEKSNLKLA
101: QLEMELERAR QQGLYILGSN GNMGLSSTIN PGIAAFEMEY SLWVEEQQKK NVELRNILQS HVSEMELQLL VETVLNHYYN LFRIKADAAK ADVFYLMSGM
201: WRTSVERFFL WIGGFKPSEL INIVMPQLEP LSDQQIVKIC NLRHCCQQAE DALTQGMDKL QQTLAQNILT MTTGMGSYSS QMVSSMEKLE ALESFVNQAD
301: HLRQQTLQQM SLVLTTRQSA RGLLAFGEYL QRLRALSSLW AARPREPT

Best Arabidopsis Sequence Match ( AT1G77920.1 )
(BLAST)

001: MMSSSSPTQL ASLRDMGIYE PFQQIVGWGN VFKSDINDHS PNTATSSIIQ VDPRIDDHNN NIKINYDSSH NQIEAEQPSS NDNQDDDGRI HDKMKRRLAQ
101: NREAARKSRL RKKAYVQQLE ESRLKLSQLE QELEKVKQQG HLGPSGSINT GIASFEMEYS HWLQEQSRRV SELRTALQSH ISDIELKMLV ESCLNHYANL
201: FQMKSDAAKA DVFYLISGMW RTSTERFFQW IGGFRPSELL NVVMPYLQPL TDQQILEVRN LQQSSQQAED ALSQGIDKLQ QSLAESIVID AVIESTHYPT
301: HMAAAIENLQ ALEGFVNQAD HLRQQTLQQM AKILTTRQSA RGLLALGEYL HRLRALSSLW AARPQEPT

Arabidopsis Description

TGA7Transcription factor TGA7 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.