Factsheet for Solyc05g009660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009890.1.1
Solyc01g009900.2.1
Solyc01g009910.1.1
Solyc05g015910.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68640.1	Solyc01g009890.1.1	AT3G02000.1	19218396
AT1G68640.1	Solyc01g009900.2.1	AT3G02000.1	19218396
AT1G68640.1	Solyc01g009910.1.1	AT3G02000.1	19218396
AT1G68640.1	Solyc05g015910.1.1	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033741	Potato	nucleus	95.66	95.86
VIT_01s0011g03230.t01	Wine grape	nucleus	71.49	76.38
Solyc11g064950.1.1	Tomato	nucleus	48.14	71.91
Solyc01g008730.2.1	Tomato	nucleus	46.69	69.11
KRH35977	Soybean	nucleus	62.81	66.67
Os10t0566200-00	Rice	extracellular	16.12	66.1
KRG90784	Soybean	nucleus	61.98	65.93
GSMUA_Achr9P15550_001	Banana	nucleus	57.64	65.03
Os06t0265400-01	Rice	nucleus	50.83	63.9
KRH70569	Soybean	nucleus	61.36	63.6
CDY38608	Canola	nucleus	56.61	61.99
AT1G68640.1	Thale cress	nucleus	57.85	61.95
Bra004329.1-P	Field mustard	nucleus	56.41	61.9
CDX95999	Canola	nucleus	56.41	61.76
HORVU7Hr1G042180.5	Barley	nucleus	47.52	61.01
KRH75411	Soybean	nucleus	61.16	60.91
Solyc10g080780.1.1	Tomato	cytosol	32.02	57.62
Solyc10g080770.1.1	Tomato	nucleus	53.51	57.56
Os01t0882200-00	Rice	cytosol, extracellular	16.53	56.34
TraesCS7D01G209800.1	Wheat	nucleus	51.45	55.58
TraesCS7A01G207100.1	Wheat	nucleus	50.83	55.53
TraesCS7B01G114300.1	Wheat	nucleus	51.24	55.36
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	38.64	55.16
Zm00001d037317_P003	Maize	nucleus	48.76	54.63
OQU76203	Sorghum	nucleus	49.17	51.52
Solyc12g056860.1.1	Tomato	nucleus	33.68	46.84
Solyc04g011670.2.1	Tomato	nucleus	36.16	46.79
Solyc11g068370.1.1	Tomato	nucleus	35.74	46.51
Solyc04g072460.2.1	Tomato	nucleus	33.88	45.43
Solyc04g054320.2.1	Tomato	nucleus	34.09	44.59
Solyc10g080410.1.1	Tomato	nucleus	38.22	40.3
Solyc06g074320.2.1	Tomato	nucleus	41.12	39.72
Solyc10g078670.1.1	Tomato	nucleus	39.46	39.22

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	ncoils:Coil	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908
GO:GO:0009909	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:K4BXE0
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF372	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc05g009660.2	EnsemblPlants:Solyc05g009660.2.1	InterPro:TGA_domain
UniParc:UPI0002766C55	InterPro:bZIP	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:3852729..3858146

Molecular Weight (calculated)

53300.8 Da

IEP (calculated)

6.578

GRAVY (calculated)

-0.473

Length

484 amino acids

Sequence
(BLAST)

001: MQAFKEAAVI NNNNNSNSNS NSSMYCHSSY YLRGDEDSRL AARFADIGEL EQSTGFTQDD AVDLSRSTVY GEMRPNNVGI VSCNNNNLHF GELNTSIGSS
101: ETGVETGRFM LQKAQTGMVG GGGGGGGVVG GGVALGNVQH FENWGDSGIA DHSQQTDTST DVDTDERNHQ GQGVQHGALI AVDSMDLSKV KLGDQKTLRR
201: LAQNREAARK SRLRKKAYVQ QLENSRLKLS QLEQELKRAR QQGIFIANGY AGDQSLSAGG NGALAFDMDY ARWLDEHQRL ISDLRSAVNS HRGDNELRHL
301: VDGVMSHYDE KFKLKSVGLK ADVFHMLSGM WKTPVERCFM WLGGFRSSEL LKILGNHLEP FTEQQLIGIC NLQQSSQQAE DALSQGMEAL QQLLIDTLSS
401: TSLGPSGSGN VADYMGQMAI AMNQLATLEN FLYQADLLRQ RTLQQLHRIL TTRQAARALL VISDYMSRLR ALSSLWLARP KDQL

Best Arabidopsis Sequence Match ( AT1G68640.1 )
(BLAST)

001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD

Arabidopsis Description

PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.