Factsheet for Bra004329.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000980.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68640.1	Bra000980.1-P	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95999	Canola	nucleus	100.0	99.77
CDY38608	Canola	nucleus	98.41	98.19
AT1G68640.1	Thale cress	nucleus	90.7	88.5
Bra034767.1-P	Field mustard	nucleus	47.85	63.75
Os10t0566200-00	Rice	extracellular	17.01	63.56
VIT_01s0011g03230.t01	Wine grape	nucleus	64.17	62.47
Bra001443.1-P	Field mustard	nucleus	46.49	61.93
Bra038705.1-P	Field mustard	nucleus	46.71	61.68
Bra009241.1-P	Field mustard	nucleus	43.31	61.61
Bra028713.1-P	Field mustard	nucleus	44.9	60.74
Os06t0265400-01	Rice	nucleus	51.7	59.22
KRH35977	Soybean	nucleus	59.18	57.24
KRG90784	Soybean	nucleus	58.96	57.14
GSMUA_Achr9P15550_001	Banana	nucleus	55.56	57.11
Solyc05g009660.2.1	Tomato	nucleus	61.9	56.41
PGSC0003DMT400033741	Potato	nucleus	61.45	56.11
HORVU7Hr1G042180.5	Barley	nucleus	47.62	55.7
KRH70569	Soybean	nucleus	57.82	54.6
Os01t0882200-00	Rice	cytosol, extracellular	17.46	54.23
KRH75411	Soybean	nucleus	58.28	52.88
TraesCS7A01G207100.1	Wheat	nucleus	52.61	52.37
TraesCS7D01G209800.1	Wheat	nucleus	52.61	51.79
TraesCS7B01G114300.1	Wheat	nucleus	52.38	51.56
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	37.64	48.97
Zm00001d037317_P003	Maize	nucleus	47.85	48.84
Bra015646.1-P	Field mustard	nucleus	37.41	48.67
Bra028604.1-P	Field mustard	nucleus	37.87	46.13
OQU76203	Sorghum	nucleus	48.3	46.1
Bra024366.1-P	Field mustard	nucleus	37.41	44.96
Bra009063.1-P	Field mustard	nucleus	36.96	44.78
Bra031364.1-P	Field mustard	nucleus	37.19	43.39
Bra031871.1-P	Field mustard	nucleus	36.28	43.24
Bra009233.1-P	Field mustard	cytosol	27.44	43.21
Bra016389.1-P	Field mustard	nucleus	36.05	43.21
Bra031622.1-P	Field mustard	nucleus	39.46	40.65
Bra037809.1-P	Field mustard	nucleus	34.24	38.52
Bra018634.1-P	Field mustard	nucleus	40.59	37.68
Bra037374.1-P	Field mustard	nucleus	25.4	35.67
Bra005914.1-P	Field mustard	nucleus	33.79	34.33

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EnsemblPlantsGene:Bra004329	EnsemblPlants:Bra004329.1
EnsemblPlants:Bra004329.1-P	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	UniProt:M4CJE5	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF372	SMART:SM00338	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI00025417B3	InterPro:bZIP	SEG:seg	:	:

Description

AT1G68640 (E=8e-193) PAN | PAN (PERIANTHIA); DNA binding / transcription factor

Coordinates

chrA07:-:18012719..18015353

Molecular Weight (calculated)

49723.7 Da

IEP (calculated)

6.025

GRAVY (calculated)

-0.484

Length

441 amino acids

Sequence
(BLAST)

001: MQSSFKTVPF NPDFYSQASF FFRGDSCLDE FHQPINGFHH DEAVGLSPNV TVAASNNLHY TTFDTVMDYG LRERLEGEDE CLDTGELMYQ RGTRLVGGGE
101: VNSSLDKWCD SVSAMADNSQ HTDTSTDIDT DDKSQLNGVN QGMLLATNCS DQSKTLRRLA QNREAARKSR LRKKAYVQQL ENSRIRLAQL EEELKRARQQ
201: QGCSVERGAS RENTHAPAGN GVFSFELEYA RWMEEHQRLI NDLRAGVHSQ LGDNELRVLV DAVMSHYDEI FRLKGIGTKV DVFHMLSGMW QTPAERFFMW
301: LGGFRSSELL KILGNHVDPL TDQQLIGICN LQQSSQQAED ALSQGMEALQ QSLLETLSSA SMGPNSSANV ADYMGHMAMA MGKLGTLENF LRQADLLRQQ
401: TLQQLHRILT TRQAARAFLV IHDYICRLRA LSSLWLARPR D

Best Arabidopsis Sequence Match ( AT1G68640.1 )
(BLAST)

001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD

Arabidopsis Description

PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.