Factsheet for Bra037809.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18683	Canola	cytosol	88.52	93.28
Bra024366.1-P	Field mustard	nucleus	82.4	88.01
Bra031871.1-P	Field mustard	nucleus	82.65	87.57
AT5G65210.2	Thale cress	nucleus	80.1	85.33
Bra028604.1-P	Field mustard	nucleus	71.68	77.62
Bra009063.1-P	Field mustard	nucleus	70.15	75.55
VIT_07s0031g01320.t01	Wine grape	nucleus	61.22	68.77
KRG97639	Soybean	nucleus	59.18	64.09
KRH31239	Soybean	nucleus	58.93	63.46
Bra037374.1-P	Field mustard	nucleus	47.7	59.55
GSMUA_Achr5P16630_001	Banana	nucleus	54.59	58.63
KRH59415	Soybean	nucleus	55.1	58.38
KRH43266	Soybean	nucleus	56.12	58.05
GSMUA_AchrUn_...	Banana	nucleus	51.79	57.34
Solyc04g011670.2.1	Tomato	nucleus	54.34	56.95
Solyc04g054320.2.1	Tomato	nucleus	53.06	56.22
PGSC0003DMT400033308	Potato	nucleus	51.02	56.18
Bra015646.1-P	Field mustard	nucleus	47.45	54.87
Bra031364.1-P	Field mustard	nucleus	52.3	54.23
GSMUA_Achr10P...	Banana	nucleus	48.21	53.85
Bra016389.1-P	Field mustard	nucleus	50.51	53.8
Zm00001d016312_P001	Maize	cytosol	12.76	53.76
PGSC0003DMT400016235	Potato	nucleus	50.51	50.51
Bra009241.1-P	Field mustard	nucleus	39.29	49.68
Bra028713.1-P	Field mustard	nucleus	39.8	47.85
Bra001443.1-P	Field mustard	nucleus	40.31	47.73
Bra034767.1-P	Field mustard	nucleus	39.8	47.13
Bra038705.1-P	Field mustard	nucleus	39.8	46.71
KXG38496	Sorghum	nucleus	35.71	45.02
Os04t0637000-01	Rice	nucleus	45.41	44.84
KXG27222	Sorghum	nucleus	44.9	43.14
Zm00001d026398_P006	Maize	nucleus	43.88	41.75
KRG92164	Soybean	nucleus	24.49	40.85
Zm00001d024160_P003	Maize	nucleus	43.62	40.33
TraesCS2D01G529000.1	Wheat	nucleus	43.62	40.24
TraesCS2B01G556600.1	Wheat	nucleus	44.64	40.23
TraesCS2A01G526300.1	Wheat	nucleus	42.86	40.1
KRH34622	Soybean	cytosol	23.21	39.39
Os08t0176900-01	Rice	nucleus	39.03	39.33
Zm00001d041428_P001	Maize	cytosol	14.8	37.18
Bra009233.1-P	Field mustard	cytosol	26.02	36.43
Zm00001d002143_P002	Maize	cytosol	40.56	36.22
Bra031622.1-P	Field mustard	nucleus	38.27	35.05
Bra004329.1-P	Field mustard	nucleus	38.52	34.24
OQU79985	Sorghum	golgi, vacuole	44.64	33.91
Bra018634.1-P	Field mustard	nucleus	38.27	31.58
Bra005914.1-P	Field mustard	nucleus	32.4	29.26
HORVU2Hr1G116090.2	Barley	cytosol	28.06	26.0

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EnsemblPlantsGene:Bra037809	EnsemblPlants:Bra037809.1	EnsemblPlants:Bra037809.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:M4F9P6	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF266
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0002541B3C	InterPro:bZIP	:

Description

AT5G65210 (E=7e-100) TGA1 | TGA1; DNA binding / calmodulin binding / transcription factor

Coordinates

chrA09:+:3672185..3674079

Molecular Weight (calculated)

44728.2 Da

IEP (calculated)

8.016

GRAVY (calculated)

-0.505

Length

392 amino acids

Sequence
(BLAST)

001: MNSTSTHFVP PRRVNIYEPL HQFGMWGETF KSNIGNGNIN TPSHIIIPNN QKLDNNMSED TSHGTPLIFD QETSTSRHPD KIKRRLAQNR EAAKKSRLRK
101: KAYVQQLETS RLKLIQLEQE LDRARQQGFY VGNGIDTSTT TSLGFSENMN PGLYQEQGSI LDKNQNLNVK IKTGIAAFEM EYGQWIEEQN KQICELRTVL
201: QGHVGDVELR LLVEIAMKHY FDLFRMKSAA AKEDVFFVMS GMWRTSAERF FLWIGGFRPS DLIKVLLPHF DVMTDQQILD VCNLRQSCQQ AEDALSQGME
301: KLQHTLADCV AGGRLGEGNY IPQVNSAMER AEASVSFVNQ DLDYTTSGSR VVGSWWILTT RQAARGVLAL WEYFQRLRAL SSSWATRHRE PT

Best Arabidopsis Sequence Match ( AT5G65210.5 )
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Arabidopsis Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.