Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G529000.1 | Wheat | nucleus | 93.56 | 92.24 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 93.08 | 89.66 |
| Zm00001d016312_P001 | Maize | cytosol | 15.75 | 70.97 |
| KXG27222 | Sorghum | nucleus | 65.63 | 67.4 |
| Os04t0637000-01 | Rice | nucleus | 61.81 | 65.24 |
| Zm00001d026398_P006 | Maize | nucleus | 62.05 | 63.11 |
| Zm00001d002143_P002 | Maize | cytosol | 61.58 | 58.77 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 49.64 | 56.99 |
| VIT_07s0031g01320.t01 | Wine grape | nucleus | 46.3 | 55.59 |
| KRG97639 | Soybean | nucleus | 46.54 | 53.87 |
| KRH31239 | Soybean | nucleus | 46.54 | 53.57 |
| VIT_18s0001g04470.t01 | Wine grape | nucleus | 45.82 | 52.89 |
| Bra015646.1-P | Field mustard | nucleus | 42.72 | 52.8 |
| AT5G10030.3 | Thale cress | nucleus | 45.58 | 52.47 |
| Bra024366.1-P | Field mustard | nucleus | 45.11 | 51.5 |
| CDY08810 | Canola | nucleus | 45.11 | 51.5 |
| Bra028604.1-P | Field mustard | nucleus | 44.39 | 51.38 |
| CDX85782 | Canola | nucleus | 44.39 | 51.38 |
| CDY40074 | Canola | nucleus | 44.15 | 51.1 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 51.07 | 50.59 |
| CDY37811 | Canola | nucleus | 44.63 | 50.54 |
| CDY33975 | Canola | nucleus | 44.63 | 50.54 |
| CDY14552 | Canola | nucleus | 44.15 | 50.41 |
| CDX69866 | Canola | nucleus | 43.68 | 50.27 |
| Bra009063.1-P | Field mustard | nucleus | 43.68 | 50.27 |
| Bra031871.1-P | Field mustard | nucleus | 44.39 | 50.27 |
| AT1G77920.1 | Thale cress | nucleus | 43.91 | 50.0 |
| Solyc12g056860.1.1 | Tomato | nucleus | 41.29 | 49.71 |
| Solyc04g072460.2.1 | Tomato | nucleus | 42.72 | 49.58 |
| AT5G65210.2 | Thale cress | nucleus | 43.44 | 49.46 |
| PGSC0003DMT400070884 | Potato | nucleus | 42.24 | 49.03 |
| Solyc04g011670.2.1 | Tomato | nucleus | 43.68 | 48.93 |
| CDY21625 | Canola | nucleus | 42.48 | 48.9 |
| TraesCS3A01G190700.2 | Wheat | nucleus | 38.66 | 48.8 |
| PGSC0003DMT400043651 | Potato | nucleus | 42.0 | 48.75 |
| CDX68037 | Canola | nucleus | 42.96 | 48.52 |
| Solyc04g054320.2.1 | Tomato | nucleus | 42.48 | 48.11 |
| PGSC0003DMT400033308 | Potato | nucleus | 40.81 | 48.03 |
| KRH43266 | Soybean | nucleus | 43.2 | 47.76 |
| KRH59415 | Soybean | nucleus | 42.0 | 47.57 |
| TraesCS4A01G126300.2 | Wheat | nucleus | 37.95 | 47.46 |
| AT1G22070.1 | Thale cress | nucleus | 43.44 | 47.4 |
| KRH53141 | Soybean | nucleus | 40.1 | 47.32 |
| TraesCS2A01G097500.2 | Wheat | nucleus | 37.95 | 47.32 |
| KRH63045 | Soybean | cytosol | 10.5 | 46.81 |
| CDY38253 | Canola | nucleus | 42.96 | 46.75 |
| Bra016389.1-P | Field mustard | nucleus | 41.05 | 46.74 |
| KRH64780 | Soybean | nucleus | 40.33 | 46.69 |
| CDY41495 | Canola | nucleus | 41.05 | 46.61 |
| Bra031364.1-P | Field mustard | nucleus | 42.0 | 46.56 |
| CDY18683 | Canola | cytosol | 41.29 | 46.51 |
| CDY38843 | Canola | nucleus | 41.05 | 46.49 |
| CDX81273 | Canola | nucleus | 42.72 | 46.02 |
| KRH18838 | Soybean | nucleus | 39.38 | 44.59 |
| KRH16629 | Soybean | nucleus | 39.14 | 44.32 |
| PGSC0003DMT400016235 | Potato | nucleus | 41.05 | 43.88 |
| Bra037809.1-P | Field mustard | nucleus | 40.1 | 42.86 |
| CDY21336 | Canola | nucleus | 42.48 | 42.58 |
| CDX88399 | Canola | nucleus | 43.44 | 42.33 |
| Zm00001d041428_P001 | Maize | cytosol | 15.75 | 42.31 |
| TraesCS1A01G096300.1 | Wheat | nucleus | 33.65 | 42.09 |
| CDX87494 | Canola | nucleus | 44.15 | 41.67 |
| KRG92164 | Soybean | nucleus | 20.76 | 37.02 |
| Bra037374.1-P | Field mustard | nucleus | 26.97 | 35.99 |
| TraesCS7A01G207100.1 | Wheat | nucleus | 37.95 | 35.89 |
| TraesCS3A01G334100.1 | Wheat | nucleus | 40.1 | 35.37 |
| KRH34622 | Soybean | cytosol | 18.85 | 34.2 |
| TraesCS4A01G183400.2 | Wheat | nucleus | 37.23 | 28.84 |
| TraesCS6A01G165800.1 | Wheat | nucleus | 31.98 | 28.76 |
| TraesCS5A01G265600.1 | Wheat | nucleus | 35.32 | 28.57 |
| CDX79240 | Canola | nucleus | 37.71 | 27.72 |
| TraesCS5A01G174200.1 | Wheat | nucleus | 30.79 | 27.62 |
| TraesCS1A01G276600.2 | Wheat | nucleus | 33.41 | 26.62 |
| TraesCS3A01G372400.2 | Wheat | nucleus | 36.28 | 26.53 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR004827 |
| InterPro:IPR025422 | PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF180 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain | EnsemblPlantsGene:TraesCS2A01G526300 |
| EnsemblPlants:TraesCS2A01G526300.1 | InterPro:bZIP | TIGR:cd14708 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2A:-:746682062..746688179
Molecular Weight (calculated)
46272.9 Da
IEP (calculated)
6.713
GRAVY (calculated)
-0.536
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MELYPGYLED HFNIHKLSGT GGASPPEYMT SAAAAQYAPA PLRMAMYERA PPQQQHHQHQ QQQQPALGMW SSEPYKVDSG GQATSGSSIM EPDAKFDHPG
101: LDEDPHMDEL ETADQGASKP KEKVMRRLAQ NREAARKSRL RKKAYIQQLE SSRIKLAQLE QELQRTRQQQ GMYGGNPGTS LHRGGSAGHL GFAAAGQMMD
201: PGVAAFEIAY GHWVDDQKRN TEELRSALQP GQGTSELELE VMVQTGLANY DNLFRVKGAA AQADVFCVMS GLWRSPAERF FLWIGGFRPS EVLKILSPQL
301: QPMSEPQSVA VYALQLTSAQ AEDALSQGMQ KLQQTLAESL TDPFAAPDAY MAGAIEKLKG LVGFVQQADH LRQETLQNMH RILTTRQAAK GLLVLGDYFQ
401: RLRALSTLWA ARPHESAIS
101: LDEDPHMDEL ETADQGASKP KEKVMRRLAQ NREAARKSRL RKKAYIQQLE SSRIKLAQLE QELQRTRQQQ GMYGGNPGTS LHRGGSAGHL GFAAAGQMMD
201: PGVAAFEIAY GHWVDDQKRN TEELRSALQP GQGTSELELE VMVQTGLANY DNLFRVKGAA AQADVFCVMS GLWRSPAERF FLWIGGFRPS EVLKILSPQL
301: QPMSEPQSVA VYALQLTSAQ AEDALSQGMQ KLQQTLAESL TDPFAAPDAY MAGAIEKLKG LVGFVQQADH LRQETLQNMH RILTTRQAAK GLLVLGDYFQ
401: RLRALSTLWA ARPHESAIS
001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
Arabidopsis Description
TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.