Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003927_P001 | |
| Zm00001d016593_P001 | |
| Zm00001d039469_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016312_P001 | Maize | cytosol | 36.54 | 61.29 |
| KRH63045 | Soybean | cytosol | 17.95 | 29.79 |
| VIT_07s0031g01320.t01 | Wine grape | nucleus | 44.23 | 19.77 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 44.23 | 18.9 |
| PGSC0003DMT400033308 | Potato | nucleus | 42.31 | 18.54 |
| Solyc04g054320.2.1 | Tomato | nucleus | 42.95 | 18.11 |
| Zm00001d022542_P002 | Maize | nucleus | 37.82 | 17.72 |
| KXG27222 | Sorghum | nucleus | 46.15 | 17.65 |
| Solyc12g056860.1.1 | Tomato | nucleus | 39.1 | 17.53 |
| Zm00001d026398_P006 | Maize | nucleus | 46.15 | 17.48 |
| KRG97639 | Soybean | nucleus | 40.38 | 17.4 |
| Solyc04g011670.2.1 | Tomato | nucleus | 41.03 | 17.11 |
| Bra009063.1-P | Field mustard | nucleus | 39.74 | 17.03 |
| KRH31239 | Soybean | nucleus | 39.74 | 17.03 |
| CDX69866 | Canola | nucleus | 39.74 | 17.03 |
| CDY37811 | Canola | nucleus | 40.38 | 17.03 |
| CDY33975 | Canola | nucleus | 40.38 | 17.03 |
| Bra031871.1-P | Field mustard | nucleus | 40.38 | 17.03 |
| KRG92164 | Soybean | nucleus | 25.64 | 17.02 |
| Solyc04g072460.2.1 | Tomato | nucleus | 39.1 | 16.9 |
| VIT_18s0001g04470.t01 | Wine grape | nucleus | 39.1 | 16.8 |
| AT5G10030.3 | Thale cress | nucleus | 39.1 | 16.76 |
| Zm00001d002143_P002 | Maize | cytosol | 46.79 | 16.63 |
| CDY14552 | Canola | nucleus | 39.1 | 16.62 |
| Bra024366.1-P | Field mustard | nucleus | 39.1 | 16.62 |
| CDY08810 | Canola | nucleus | 39.1 | 16.62 |
| PGSC0003DMT400070884 | Potato | nucleus | 38.46 | 16.62 |
| PGSC0003DMT400043651 | Potato | nucleus | 38.46 | 16.62 |
| CDY40074 | Canola | nucleus | 38.46 | 16.57 |
| Bra028604.1-P | Field mustard | nucleus | 38.46 | 16.57 |
| CDX85782 | Canola | nucleus | 38.46 | 16.57 |
| Bra015646.1-P | Field mustard | nucleus | 35.9 | 16.52 |
| CDY21625 | Canola | nucleus | 38.46 | 16.48 |
| Zm00001d023424_P001 | Maize | nucleus | 32.69 | 16.45 |
| KRH34622 | Soybean | cytosol | 24.36 | 16.45 |
| Os04t0637000-01 | Rice | nucleus | 41.67 | 16.37 |
| Zm00001d015845_P001 | Maize | cytosol | 28.21 | 16.36 |
| PGSC0003DMT400016235 | Potato | nucleus | 40.38 | 16.07 |
| AT5G65210.2 | Thale cress | nucleus | 37.82 | 16.03 |
| KRH59415 | Soybean | nucleus | 37.82 | 15.95 |
| TraesCS2A01G526300.1 | Wheat | nucleus | 42.31 | 15.75 |
| KRH18838 | Soybean | nucleus | 37.18 | 15.68 |
| KRH16629 | Soybean | nucleus | 37.18 | 15.68 |
| CDY18683 | Canola | cytosol | 37.18 | 15.59 |
| KRH43266 | Soybean | nucleus | 37.82 | 15.57 |
| CDX68037 | Canola | nucleus | 36.54 | 15.36 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 42.31 | 15.17 |
| CDX81273 | Canola | nucleus | 37.82 | 15.17 |
| AT1G22070.1 | Thale cress | nucleus | 37.18 | 15.1 |
| Bra031364.1-P | Field mustard | nucleus | 36.54 | 15.08 |
| CDY38253 | Canola | nucleus | 37.18 | 15.06 |
| TraesCS2D01G529000.1 | Wheat | nucleus | 41.03 | 15.06 |
| AT1G77920.1 | Thale cress | nucleus | 35.26 | 14.95 |
| KRH53141 | Soybean | nucleus | 33.97 | 14.93 |
| CDY38843 | Canola | nucleus | 35.26 | 14.86 |
| Bra037809.1-P | Field mustard | nucleus | 37.18 | 14.8 |
| Bra016389.1-P | Field mustard | nucleus | 34.62 | 14.67 |
| CDY41495 | Canola | nucleus | 34.62 | 14.63 |
| Zm00001d028936_P001 | Maize | nucleus | 36.54 | 14.58 |
| KRH64780 | Soybean | nucleus | 32.05 | 13.81 |
| Zm00001d008225_P001 | Maize | nucleus | 37.18 | 13.81 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 37.18 | 13.71 |
| CDY21336 | Canola | nucleus | 36.54 | 13.64 |
| Bra037374.1-P | Field mustard | nucleus | 26.92 | 13.38 |
| Zm00001d010658_P001 | Maize | nucleus | 29.49 | 13.33 |
| CDX88399 | Canola | nucleus | 36.54 | 13.26 |
| CDX87494 | Canola | nucleus | 36.54 | 12.84 |
| Zm00001d005143_P001 | Maize | nucleus | 33.33 | 12.65 |
| Zm00001d024160_P003 | Maize | nucleus | 33.97 | 12.5 |
| Zm00001d046751_P001 | Maize | nucleus | 35.9 | 12.23 |
| Zm00001d037317_P003 | Maize | nucleus | 32.69 | 11.81 |
| Zm00001d043153_P001 | Maize | nucleus | 30.77 | 11.37 |
| Zm00001d052543_P001 | Maize | nucleus | 33.33 | 10.7 |
| Zm00001d012553_P003 | Maize | nucleus | 31.41 | 10.43 |
| Zm00001d020938_P002 | Maize | nucleus | 32.05 | 10.29 |
| Zm00001d038296_P001 | Maize | nucleus | 33.97 | 10.21 |
| Zm00001d037316_P008 | Maize | cytosol, nucleus, peroxisome, plastid | 21.79 | 10.03 |
| Zm00001d006027_P002 | Maize | nucleus | 32.05 | 9.94 |
| Zm00001d012294_P009 | Maize | nucleus | 33.33 | 9.37 |
| CDX79240 | Canola | nucleus | 33.33 | 9.12 |
| Zm00001d045823_P001 | Maize | cytosol | 15.38 | 7.95 |
| Zm00001d042777_P006 | Maize | nucleus | 32.69 | 7.85 |
| Zm00001d015846_P001 | Maize | nucleus | 2.56 | 1.98 |
Protein Annotations
| MapMan:35.1 | UniProt:A0A1D6MW11 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:IPR025422 | ProteinID:ONM32992.1 | PFAM:PF14144 | PFscan:PS51806 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF180 | InterPro:TGA_domain | UniParc:UPI0008458A9E | EnsemblPlantsGene:Zm00001d041428 | EnsemblPlants:Zm00001d041428_P001 | EnsemblPlants:Zm00001d041428_T001 |
Description
Transcription factor TGA4
Coordinates
chr3:-:119192436..119195213
Molecular Weight (calculated)
17435.8 Da
IEP (calculated)
8.849
GRAVY (calculated)
-0.562
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDEQKRHT AELTSALQGQ ETSELELRLL VETGLSNYKR LFRIKAAAAN ADVFYDMSGL WKTPAERFFL LIGGFRPSDV LKDAGERTSG AVGPSMDKME
101: KAPGEAFGRR NPSGPVNQTD SYAQQPHETV SMLLKEIMHS IYRSGKGLWR GHSKYL
101: KAPGEAFGRR NPSGPVNQTD SYAQQPHETV SMLLKEIMHS IYRSGKGLWR GHSKYL
001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT
Arabidopsis Description
TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.