Factsheet for Zm00001d012553_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003927_P001
Zm00001d004966_P001
Zm00001d008225_P001
Zm00001d010658_P001
Zm00001d011878_P001
Zm00001d012553_P003
Zm00001d016593_P001
Zm00001d022542_P002
Zm00001d023246_P001
Zm00001d028936_P001
Zm00001d039469_P001
Zm00001d042111_P001
Zm00001d043153_P001
Zm00001d052468_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	10659709
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	10662863
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	12383081
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	15634206
AT5G06960.1	Zm00001d004966_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d011878_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d023246_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d042111_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d052468_P002	AT2G41370.1	21798944
AT5G06960.1	Zm00001d003927_P001	AT3G02000.1	19218396
AT5G06960.1	Zm00001d016593_P001	AT3G02000.1	19218396
AT5G06960.1	Zm00001d008225_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d010658_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d012553_P003	AT5G06960.1	17098811
AT5G06960.1	Zm00001d022542_P002	AT5G06960.1	17098811
AT5G06960.1	Zm00001d028936_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d043153_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d008225_P001	AT5G06960.1	21798944
AT5G06960.1	Zm00001d010658_P001	AT5G06960.1	21798944
AT5G06960.1	Zm00001d012553_P003	AT5G06960.1	21798944
AT5G06960.1	Zm00001d022542_P002	AT5G06960.1	21798944
AT5G06960.1	Zm00001d028936_P001	AT5G06960.1	21798944
AT5G06960.1	Zm00001d043153_P001	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043153_P001	Maize	nucleus	79.57	88.63
EES03778	Sorghum	nucleus	86.6	86.97
TraesCS3A01G334100.1	Wheat	nucleus	75.96	75.16
TraesCS3B01G365100.1	Wheat	nucleus	75.96	74.84
HORVU3Hr1G079010.5	Barley	nucleus	75.96	74.84
Os01t0808100-01	Rice	nucleus	57.87	74.73
TraesCS3D01G327600.1	Wheat	nucleus	75.74	74.63
Solyc11g064950.1.1	Tomato	nucleus	48.94	70.99
PGSC0003DMT400024428	Potato	nucleus	48.94	70.99
KRH36324	Soybean	nucleus	49.79	70.48
Zm00001d022542_P002	Maize	nucleus	49.36	69.67
Solyc01g008730.2.1	Tomato	nucleus	47.87	68.81
AT5G06950.5	Thale cress	nucleus	47.23	67.27
CDY08443	Canola	nucleus	47.02	66.77
Bra034767.1-P	Field mustard	nucleus	46.81	66.47
Bra009241.1-P	Field mustard	nucleus	43.4	65.81
CDY42138	Canola	nucleus	45.32	65.74
CDX70053	Canola	nucleus	45.32	65.14
CDX73830	Canola	nucleus	45.74	64.95
CDY00762	Canola	nucleus	45.74	64.95
Bra001443.1-P	Field mustard	nucleus	45.74	64.95
CDX98971	Canola	nucleus	45.32	64.94
Bra038705.1-P	Field mustard	nucleus	45.96	64.67
CDY50562	Canola	nucleus	45.96	64.67
CDY52616	Canola	nucleus	45.74	64.56
VIT_08s0007g05170.t01	Wine grape	nucleus	60.85	63.41
AT5G06960.1	Thale cress	nucleus	44.47	63.33
CDY05010	Canola	nucleus	42.98	61.96
VIT_13s0084g00660.t01	Wine grape	nucleus	61.7	61.83
Bra028713.1-P	Field mustard	nucleus	42.77	61.66
CDY14061	Canola	nucleus	42.77	61.66
AT3G12250.4	Thale cress	nucleus	46.17	61.13
KRG93068	Soybean	nucleus	57.23	60.59
KRG95103	Soybean	nucleus	58.3	59.7
KRH66771	Soybean	nucleus	58.09	59.35
KRH66777	Soybean	nucleus	36.6	59.31
Zm00001d008225_P001	Maize	nucleus	52.13	58.33
PGSC0003DMT400060926	Potato	nucleus	53.62	58.2
KRH20680	Soybean	nucleus	57.23	57.36
Solyc10g080770.1.1	Tomato	nucleus	54.26	56.67
Zm00001d010658_P001	Maize	nucleus	41.49	56.52
Solyc10g080780.1.1	Tomato	cytosol	31.28	54.65
Zm00001d028936_P001	Maize	nucleus	45.11	54.22
PGSC0003DMT400026710	Potato	mitochondrion	20.21	53.98
PGSC0003DMT400060922	Potato	nucleus	30.21	52.99
KRH13334	Soybean	nucleus	55.74	52.72
Zm00001d023424_P001	Maize	nucleus	31.28	47.42
Zm00001d037317_P003	Maize	nucleus	42.77	46.53
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	32.77	45.43
Zm00001d016312_P001	Maize	cytosol	8.09	40.86
Zm00001d052543_P001	Maize	nucleus	37.45	36.21
Zm00001d026398_P006	Maize	nucleus	30.64	34.95
Zm00001d020938_P002	Maize	nucleus	35.53	34.36
Zm00001d024160_P003	Maize	nucleus	30.64	33.96
Zm00001d005143_P001	Maize	nucleus	28.72	32.85
Zm00001d015845_P001	Maize	cytosol	18.72	32.71
Zm00001d006027_P002	Maize	nucleus	34.47	32.21
Zm00001d046751_P001	Maize	nucleus	31.06	31.88
Zm00001d041428_P001	Maize	cytosol	10.43	31.41
Zm00001d002143_P002	Maize	cytosol	28.94	30.98
Zm00001d038296_P001	Maize	nucleus	33.19	30.06
Zm00001d012294_P009	Maize	nucleus	34.04	28.83
Zm00001d015846_P001	Maize	nucleus	11.49	26.73
Zm00001d042777_P006	Maize	nucleus	36.81	26.62
Zm00001d045823_P001	Maize	cytosol	12.34	19.21

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EntrezGene:542407	UniProt:A0A1D6G9R8
ProteinID:AQK99856.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF255
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0008450207	EnsemblPlantsGene:Zm00001d012553	EnsemblPlants:Zm00001d012553_P003
EnsemblPlants:Zm00001d012553_T003	InterPro:bZIP	SEG:seg	:	:	:

Description

octopine synthase binding factor4 octopine synthase binding factor4

Coordinates

chr8:+:176514160..176521162

Molecular Weight (calculated)

50722.0 Da

IEP (calculated)

6.801

GRAVY (calculated)

-0.403

Length

470 amino acids

Sequence
(BLAST)

001: MESRRGGSGA AAEDAGGAMP SFGPTQHAIR AGADVNSMQP SRVTDFGALA QSAGFRIEDL ANLNANALFN LKPNSHTIDN SPLQFGNYGK SISPHINTTE
101: ATTAATRIDP QLSAQQTGAQ PILVALPTGN MENWGESAMA GSPMTDTSTD PDTDERNQMF EQGLVAVPTA SDSSDKSRDK LDQKTLRRLA QNREAARKSR
201: LRKKAYIQNL ESSRLKLTQL EQELQRARQQ GIFISTSGDQ PQSTSGNGNT TLTWLFLKGA LAFDMEYARW LEEHNKHVNE LRAAVNAHAG DNDLRCIVDS
301: IMVHYDEIFK LKGVAAKADV FHVLSGMWKT PAERCFMWLG GFRSSELLKL LAGHLEPLTD QQLVGISNLQ QSSQQAEDAL SQGMEALQQS LAETLASGSL
401: GPAGPSGNVA NYMGQMAMAM GKLGTLENFL RQAIQIIRRG TTARSISSEG SSVGGIELLN LIKTCRKVAA

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.