Factsheet for Zm00001d012294_P009

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33735	Sorghum	nucleus	85.05	88.56
Os01t0859500-01	Rice	nucleus	76.58	78.85
Zm00001d042777_P006	Maize	nucleus	85.77	73.23
TraesCS3B01G404800.2	Wheat	nucleus	73.87	71.55
TraesCS3A01G372400.2	Wheat	nucleus	73.15	70.86
TraesCS3D01G365200.3	Wheat	nucleus	73.87	70.69
Zm00001d038296_P001	Maize	nucleus	58.56	62.62
Zm00001d023424_P001	Maize	nucleus	34.05	60.97
GSMUA_Achr11P...	Banana	cytosol	25.95	59.5
Solyc11g068370.1.1	Tomato	nucleus	37.84	56.45
PGSC0003DMT400067782	Potato	nucleus	32.97	55.62
HORVU3Hr1G084340.10	Barley	nucleus	55.14	53.78
GSMUA_Achr11P...	Banana	nucleus	47.39	53.46
CDY22689	Canola	nucleus	40.9	53.04
Bra031622.1-P	Field mustard	nucleus	40.72	52.8
GSMUA_Achr10P...	Banana	nucleus	44.32	52.12
Bra018634.1-P	Field mustard	nucleus	44.14	51.58
PGSC0003DMT400018306	Potato	nucleus	45.23	51.43
Zm00001d022542_P002	Maize	nucleus	30.81	51.35
CDX95068	Canola	nucleus	44.14	51.26
Solyc06g074320.2.1	Tomato	nucleus	46.13	51.1
CDX93571	Canola	nucleus	43.96	51.05
VIT_06s0080g00360.t01	Wine grape	nucleus	45.95	51.0
AT1G08320.4	Thale cress	nucleus	44.14	50.94
GSMUA_Achr5P26200_001	Banana	nucleus	36.76	50.25
CDY06309	Canola	nucleus	43.78	50.21
KRH26635	Soybean	nucleus	43.6	49.59
KRH22685	Soybean	nucleus	43.6	49.39
Zm00001d052543_P001	Maize	nucleus	42.88	48.97
KRH25227	Soybean	nucleus	43.78	48.5
KRH30432	Soybean	nucleus	43.06	48.48
GSMUA_Achr3P22700_001	Banana	nucleus	43.6	47.83
Zm00001d010658_P001	Maize	nucleus	28.29	45.51
Zm00001d008225_P001	Maize	nucleus	32.43	42.86
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	25.41	41.59
Zm00001d016312_P001	Maize	cytosol	6.85	40.86
Zm00001d028936_P001	Maize	nucleus	28.65	40.66
Zm00001d037317_P003	Maize	nucleus	31.53	40.51
Zm00001d015845_P001	Maize	cytosol	19.28	39.78
Zm00001d005143_P001	Maize	nucleus	27.93	37.71
Zm00001d020938_P002	Maize	nucleus	31.89	36.42
Zm00001d043153_P001	Maize	nucleus	27.21	35.78
Zm00001d026398_P006	Maize	nucleus	26.31	35.44
Zm00001d046751_P001	Maize	nucleus	29.19	35.37
GSMUA_Achr11P...	Banana	nucleus	19.1	34.3
Zm00001d012553_P003	Maize	nucleus	28.83	34.04
Zm00001d041428_P001	Maize	cytosol	9.37	33.33
Zm00001d024160_P003	Maize	nucleus	25.41	33.25
Zm00001d006027_P002	Maize	nucleus	30.09	33.2
Zm00001d002143_P002	Maize	cytosol	24.68	31.21
Zm00001d015846_P001	Maize	nucleus	10.81	29.7
Zm00001d045823_P001	Maize	cytosol	11.53	21.19

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:103636459	MapMan:15.5.4.1	MapMan:15.5.4.7.1	UniProt:A0A1D6G817	ProteinID:AQK99288.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF215	SMART:SM00338	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI000844EDB3	EnsemblPlantsGene:Zm00001d012294	EnsemblPlants:Zm00001d012294_P009	EnsemblPlants:Zm00001d012294_T009	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

liguleless related sequence1 liguleless related sequence1

Coordinates

chr8:+:172035719..172043591

Molecular Weight (calculated)

60260.2 Da

IEP (calculated)

7.187

GRAVY (calculated)

-0.361

Length

555 amino acids

Sequence
(BLAST)

001: MVQGEESSWR MERAALPLNQ ALAYGVQAHG AGGAAAAPPT CFLYRLSLFP QLYFRDFHQP AAAAAAYFGF GELEEALIHG GGGGVDPGVI TKNDVAQAKS
101: AAAAAGYLAG AAARPPTLEI FPSLPMRHQQ QLHSGNSQSV GSTTDSSSAQ NAMSQMELAS PAASSAPRQE AMMVTADGYS YKPGLAAAAA GAAPPSFQFQ
201: QQHQHHHPLP LHGDGGGDHD KCHSHVQRKH GSTGKDGKLV DAKTERRLAQ NREAARKSRL RKKAYVQQLE TTRIRLQHVE HEFQRARSHS QGVGVGGCGA
301: AGDMSCGAAM FDMEYARWLD DDSKRLAELR GGLQAHLLLD ANLGLIVEEC MQHHDELFQL KAALARSDVF HLLTGSWTTP AERCFFWMGG FRPSELLKVL
401: IPQLDPLTEQ QLLGICSLQQ SSEQAEEALA QGLHQLHQAL ADTVAAGTLN EGSAAPNCMN IMAVALDKIA SLENFYQQAD NLRQQTLHQM RRILTTRQAA
501: RCFLSIGEYY SRLRALSNLW ASRPGDTFIR SESLSPTATE LQALHHQRQN QFSGF

Best Arabidopsis Sequence Match ( AT1G08320.1 )
(BLAST)

001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F

Arabidopsis Description

TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.