Factsheet for PGSC0003DMT400018306

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074320.2.1	Tomato	nucleus	97.75	95.21
PGSC0003DMT400067782	Potato	nucleus	50.41	74.77
VIT_06s0080g00360.t01	Wine grape	nucleus	71.11	69.4
KRH26635	Soybean	nucleus	66.8	66.8
Bra018634.1-P	Field mustard	nucleus	64.34	66.11
KRH22685	Soybean	nucleus	66.19	65.92
KRH30432	Soybean	nucleus	66.39	65.72
AT1G08320.4	Thale cress	nucleus	64.75	65.7
Zm00001d023424_P001	Maize	nucleus	41.6	65.48
CDX95068	Canola	nucleus	63.93	65.27
CDX93571	Canola	nucleus	63.93	65.27
KRH25227	Soybean	nucleus	66.39	64.67
Bra031622.1-P	Field mustard	nucleus	56.35	64.25
CDY22689	Canola	nucleus	55.94	63.78
CDY06309	Canola	nucleus	62.7	63.22
GSMUA_Achr11P...	Banana	cytosol	30.12	60.74
HORVU4Hr1G025130.10	Barley	nucleus	44.88	60.33
PGSC0003DMT400024428	Potato	nucleus	39.96	60.19
GSMUA_Achr2P06770_001	Banana	nucleus	56.15	57.32
KXG22976	Sorghum	nucleus	55.94	56.52
Zm00001d052543_P001	Maize	nucleus	55.33	55.56
GSMUA_Achr11P...	Banana	nucleus	55.74	55.28
OQU82891	Sorghum	nucleus	55.12	55.12
PGSC0003DMT400026710	Potato	mitochondrion	19.88	55.11
Os11t0152700-01	Rice	nucleus	53.07	53.51
GSMUA_Achr10P...	Banana	nucleus	51.64	53.39
Os12t0152900-01	Rice	nucleus	53.28	53.17
PGSC0003DMT400029743	Potato	nucleus, plastid	40.98	52.63
GSMUA_Achr5P26200_001	Banana	nucleus	43.44	52.22
PGSC0003DMT400060922	Potato	nucleus	28.28	51.49
Os05t0443900-01	Rice	nucleus	50.61	51.03
GSMUA_Achr3P22700_001	Banana	nucleus	51.64	49.8
Os01t0859500-01	Rice	nucleus	53.48	48.42
KXG33735	Sorghum	nucleus	52.46	48.03
PGSC0003DMT400060926	Potato	nucleus	42.42	47.81
TraesCS4D01G129900.1	Wheat	nucleus	51.84	47.03
TraesCS4A01G183400.2	Wheat	nucleus	51.64	46.58
HORVU1Hr1G073870.2	Barley	nucleus	49.59	46.27
TraesCS1B01G285800.1	Wheat	nucleus	49.39	45.82
TraesCS1A01G276600.2	Wheat	nucleus	49.18	45.63
TraesCS4B01G135000.1	Wheat	nucleus	52.87	45.58
TraesCS1D01G276100.2	Wheat	nucleus	48.98	45.44
Zm00001d012294_P009	Maize	nucleus	51.43	45.23
Zm00001d038296_P001	Maize	nucleus	47.95	45.09
PGSC0003DMT400043651	Potato	nucleus	33.2	44.88
OQU78097	Sorghum	nucleus	47.95	44.83
TraesCS3B01G404800.2	Wheat	nucleus	52.46	44.68
TraesCS3A01G372400.2	Wheat	nucleus	52.25	44.5
TraesCS3D01G365200.3	Wheat	nucleus	52.46	44.14
PGSC0003DMT400070884	Potato	nucleus	32.17	43.49
PGSC0003DMT400060865	Potato	nucleus	40.37	42.73
PGSC0003DMT400033308	Potato	nucleus	30.33	41.57
PGSC0003DMT400033741	Potato	nucleus	40.78	41.2
Zm00001d042777_P006	Maize	nucleus	52.87	39.69
PGSC0003DMT400016235	Potato	nucleus	30.53	38.01
GSMUA_Achr11P...	Banana	nucleus	23.36	36.89
HORVU3Hr1G084340.10	Barley	nucleus	37.3	31.99

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102605180	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	UniProt:M1AAE6	PFAM:PF07716	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG400007110
PGSC:PGSC0003DMG400007110	EnsemblPlants:PGSC0003DMT400018306	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF179	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000296E370	RefSeq:XP_006347246.1
InterPro:bZIP	SEG:seg	:	:	:	:

Description

BZIP transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400007110]

Coordinates

chr6:+:54903296..54909094

Molecular Weight (calculated)

54375.0 Da

IEP (calculated)

6.802

GRAVY (calculated)

-0.521

Length

488 amino acids

Sequence
(BLAST)

001: MASQGIGETG LTDSGTSHHN HNMPYAVFRG LNPASTSFMY HSTPNGNQEG AGFDFGELEE AFVLQGFKMS NDEAKASLYA AAATGKPAAT LEMFPSWPMR
101: YQQTPRENSK SREESTDSGS LSSRAQPHFE PESPISRKTS SDHQLQITHK SLEQQQQQLQ DMASNNNPRT GVLQTELSSK SNSEKTLRRL AQNREAAKKS
201: RIRKKAYVQQ LETSRIRLSQ LEQELQRASS QGIFLGGGTA AGSNISSGAA IFDMEYSRWL DDDHRHIAEL RTALQAHLSD GDLRLIVDGY IAHYDEIFNL
301: KGVAAKSDVF HLITGMWTTP AERCFLWMGG FRPSELIKML IGQLDPLTEQ QVVGIYSLQQ SSQQAEEALS QGLEQLQQSL IDTVATASLH DGMHHMALAL
401: GKLSNLEGFV RQADNLRQQT LHQLHRILTV RQAARCFLVI GEYYGRLRAL SSLWLSRPRE TLIVDDNSCQ TITGLQMVQS SQNHFSNF

Best Arabidopsis Sequence Match ( AT1G08320.3 )
(BLAST)

001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F

Arabidopsis Description

TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.