CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052543_P001	Maize	nucleus	94.06	94.44
KXG22976	Sorghum	nucleus	87.3	88.2
Os11t0152700-01	Rice	nucleus	77.46	78.1
HORVU4Hr1G025130.10	Barley	nucleus	56.97	76.58
Os12t0152900-01	Rice	nucleus	75.61	75.46
TraesCS4D01G129900.1	Wheat	nucleus	72.75	65.99
TraesCS4A01G183400.2	Wheat	nucleus	72.95	65.8
TraesCS4B01G135000.1	Wheat	nucleus	72.95	62.9
KXG39494	Sorghum	nucleus	39.55	57.61
KXG36997	Sorghum	nucleus	39.14	57.36
PGSC0003DMT400067782	Potato	nucleus	38.32	56.84
EES02530	Sorghum	nucleus	38.32	56.67
Solyc11g068370.1.1	Tomato	nucleus	42.62	55.91
GSMUA_Achr2P06770_001	Banana	nucleus	54.51	55.65
PGSC0003DMT400018306	Potato	nucleus	55.12	55.12
VIT_06s0080g00360.t01	Wine grape	nucleus	56.35	55.0
Solyc06g074320.2.1	Tomato	nucleus	55.74	54.29
Bra031622.1-P	Field mustard	nucleus	46.93	53.5
KRH26635	Soybean	nucleus	53.48	53.48
CDY22689	Canola	nucleus	46.72	53.27
KRH22685	Soybean	nucleus	53.07	52.86
Bra018634.1-P	Field mustard	nucleus	50.2	51.58
AT1G08320.4	Thale cress	nucleus	50.82	51.56
KRH30432	Soybean	nucleus	52.05	51.52
KXG22247	Sorghum	nucleus	34.63	50.9
CDX93571	Canola	nucleus	49.59	50.63
CDX95068	Canola	nucleus	49.59	50.63
KRH25227	Soybean	nucleus	51.84	50.5
CDY06309	Canola	nucleus	50.0	50.41
KXG33735	Sorghum	nucleus	50.41	46.15
EES03778	Sorghum	nucleus	41.6	43.38
OQU78097	Sorghum	nucleus	46.31	43.3
OQU89155	Sorghum	nucleus	35.45	40.71
KXG27222	Sorghum	nucleus	33.81	40.44
KXG35912	Sorghum	nucleus	38.52	37.6
OQU76203	Sorghum	nucleus	35.04	37.01
KXG38496	Sorghum	nucleus	23.36	36.66
KXG20382	Sorghum	cytosol	11.48	35.44
OQU76708	Sorghum	nucleus	22.13	34.73
KXG29702	Sorghum	nucleus	34.43	34.43
OQU79985	Sorghum	golgi, vacuole	32.17	30.43

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EntrezGene:8070637	UniProt:A0A1Z5RH82	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	EnsemblPlants:OQU82891	ProteinID:OQU82891	ProteinID:OQU82891.1
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF257	SMART:SM00338	EnsemblPlantsGene:SORBI_3005G038700	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0001A86860
RefSeq:XP_002450285.1	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:3538689..3544190

Molecular Weight (calculated)

53419.7 Da

IEP (calculated)

6.601

GRAVY (calculated)

-0.458

Length

488 amino acids

Sequence
(BLAST)

001: MGETSSSSHS RQDPSLLGYG FHGAIANSTT TPANFFDQEG ATYFGELEEA FMHQVASLRR TQQQAATVSA PHHGDTKPFP TAATTTATAA TATTAARPPP
101: TLDIFPAWPM RSLHTPKECS NVTADSTDDS ESSSKNNSNH SSDQLGAAAN MATQFDQASQ QQQLQHKNMA TSSTPRTGKP LDPKVIRRLA QNREAARKSR
201: LRKKAYIQQL ESCKLKLSQM EQDMQRARSQ GLFLGGGTGA NTSSGAAMFD VEYARWLDDH SRRLAELNGA LHAHLADGDL RAIVDDALTH HDELFQLKAM
301: AAKSDVFHLI TGVWTTPAER CFLWMGGFRP SDLLKTLLPQ LDPLTEQQVI GICNLQQSSQ QAEEALSQGL EQLHQSLADT MAGGSLIDDA NMSFMSQMAL
401: ALGKLANLEG FVIQADNLRQ QTLHQMHRIL TVRQAARCFL AIGEYHNRLR ALSSLWASRP REILVNDEGN CEEISIAAQP SQSQFSAF

Best Arabidopsis Sequence Match ( AT1G08320.3 )
(BLAST)

001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F

Arabidopsis Description

TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.