Factsheet for TraesCS4B01G135000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G129900.1	Wheat	nucleus	92.93	97.77
TraesCS4A01G183400.2	Wheat	nucleus	93.11	97.41
HORVU4Hr1G025130.10	Barley	nucleus	62.37	97.25
Os11t0152700-01	Rice	nucleus	67.14	78.51
Zm00001d023424_P001	Maize	nucleus	42.05	76.77
Os12t0152900-01	Rice	nucleus	64.31	74.44
KXG22976	Sorghum	nucleus	63.25	74.12
Zm00001d052543_P001	Maize	nucleus	62.9	73.25
OQU82891	Sorghum	nucleus	62.9	72.95
TraesCS2B01G113200.2	Wheat	nucleus	33.92	57.14
TraesCS4B01G178600.1	Wheat	nucleus	33.39	56.59
PGSC0003DMT400067782	Potato	nucleus	32.86	56.53
Solyc11g068370.1.1	Tomato	nucleus	37.1	56.45
TraesCS3B01G220400.2	Wheat	nucleus	32.51	55.42
VIT_06s0080g00360.t01	Wine grape	nucleus	47.53	53.8
GSMUA_Achr2P06770_001	Banana	nucleus	44.88	53.14
PGSC0003DMT400018306	Potato	nucleus	45.58	52.87
Solyc06g074320.2.1	Tomato	nucleus	45.94	51.9
Bra031622.1-P	Field mustard	nucleus	39.22	51.87
CDY22689	Canola	nucleus	39.05	51.64
KRH26635	Soybean	nucleus	44.17	51.23
AT1G08320.4	Thale cress	nucleus	42.93	50.52
KRH22685	Soybean	nucleus	43.64	50.41
Bra018634.1-P	Field mustard	nucleus	42.05	50.11
KRH25227	Soybean	nucleus	43.99	49.7
CDX93571	Canola	nucleus	41.87	49.58
KRH30432	Soybean	nucleus	43.11	49.49
CDY06309	Canola	nucleus	42.05	49.17
CDX95068	Canola	nucleus	41.52	49.16
TraesCS1B01G127400.1	Wheat	nucleus	27.74	46.18
TraesCS1B01G285800.1	Wheat	nucleus	41.52	44.68
TraesCS3B01G365100.1	Wheat	nucleus	36.93	43.82
TraesCS3B01G404800.2	Wheat	nucleus	44.35	43.8
TraesCS7B01G114300.1	Wheat	nucleus	32.16	40.62
TraesCS6B01G193200.2	Wheat	nucleus	30.21	37.34
TraesCS2B01G556600.1	Wheat	nucleus	27.74	36.09
TraesCS5B01G265300.1	Wheat	nucleus	31.8	34.22

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF257	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	EnsemblPlantsGene:TraesCS4B01G135000
EnsemblPlants:TraesCS4B01G135000.1	InterPro:bZIP	TIGR:cd14708	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:176260221..176265796

Molecular Weight (calculated)

62181.8 Da

IEP (calculated)

6.903

GRAVY (calculated)

-0.614

Length

566 amino acids

Sequence
(BLAST)

001: MQKQGSQEHK ESPYWEWEIE AARLSAWRSR MEEASSSSGH PRHRGPPPHH VLGYGGFHAA MAMPTNSMPP AAFFSEQDGG GGGGGGAYFG ELEEALMHQV
101: ATLSSSGRMI SHSHSQQQTA TATSTDHPHH HHHHHHGHNH AMPFPSTVAD TATAAAAAAR PPPTLDIFPS WPLALHHHHT PKEGSNVTAD STDSESSSKN
201: NINMDSSDHH QHQQQQQQGM VGLVTVSGQF HQISQQQHQQ QKMATSSTHS DRTGKALDPK TTRRLAQNRE AARKSRLRKK AYIQQLESGK LKLAQLEQDL
301: QRARSQGLLV GGAPGGNSSP GAAMFDVEYN RWLDDDSRRM IELRGGLHAH LPDGDLRAII DDTLTHYDEL FRLKSAAARA DVFHLITGMW ATPAERCFLW
401: MGGFRPSDLL KTLAPQLDPL TEQQMVGICS LEQSLQQAEE ALTQGLEQLH QSLAITVAGS GSLSDDTNMG SFMGDMAVAL GKLANLEGFV IQADNLRQQT
501: LHQMHRILTV RQAARCFLAI GEYHNRLRAL SSLWASRPRE ILMTDDGNCG ELSIAAHPSE SQYSAY

Best Arabidopsis Sequence Match ( AT1G08320.3 )
(BLAST)

001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F

Arabidopsis Description

TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.