Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G052330.3 | Barley | nucleus | 100.0 | 100.0 |
| TraesCS4D01G180200.4 | Wheat | nucleus | 99.7 | 99.4 |
| TraesCS4A01G126300.2 | Wheat | nucleus | 99.7 | 99.4 |
| KXG39494 | Sorghum | nucleus | 94.61 | 94.33 |
| Os03t0318600-01 | Rice | nucleus | 93.71 | 93.99 |
| TraesCS2B01G113200.2 | Wheat | nucleus | 90.12 | 89.58 |
| KRH36324 | Soybean | nucleus | 81.14 | 81.63 |
| PGSC0003DMT400024428 | Potato | nucleus | 78.44 | 80.86 |
| Solyc11g064950.1.1 | Tomato | nucleus | 78.44 | 80.86 |
| TraesCS3B01G220400.2 | Wheat | nucleus | 77.54 | 78.01 |
| Solyc01g008730.2.1 | Tomato | nucleus | 75.45 | 77.06 |
| CDY08443 | Canola | nucleus | 73.95 | 74.62 |
| Bra009241.1-P | Field mustard | nucleus | 69.16 | 74.52 |
| Bra034767.1-P | Field mustard | nucleus | 73.65 | 74.32 |
| AT5G06950.5 | Thale cress | nucleus | 73.35 | 74.24 |
| CDX73830 | Canola | nucleus | 73.35 | 74.02 |
| Bra001443.1-P | Field mustard | nucleus | 73.35 | 74.02 |
| PGSC0003DMT400026710 | Potato | mitochondrion | 38.92 | 73.86 |
| CDY00762 | Canola | nucleus | 73.05 | 73.72 |
| CDY50562 | Canola | nucleus | 73.65 | 73.65 |
| Bra038705.1-P | Field mustard | nucleus | 73.65 | 73.65 |
| CDY52616 | Canola | nucleus | 73.35 | 73.57 |
| CDX70053 | Canola | nucleus | 71.26 | 72.78 |
| CDX98971 | Canola | nucleus | 71.26 | 72.56 |
| Zm00001d028936_P001 | Maize | nucleus | 82.63 | 70.59 |
| AT5G06960.1 | Thale cress | nucleus | 69.46 | 70.3 |
| CDY05010 | Canola | nucleus | 67.96 | 69.63 |
| Bra028713.1-P | Field mustard | nucleus | 67.66 | 69.33 |
| CDY14061 | Canola | nucleus | 67.66 | 69.33 |
| AT3G12250.4 | Thale cress | nucleus | 73.35 | 69.01 |
| KRH66777 | Soybean | nucleus | 59.58 | 68.62 |
| CDY42138 | Canola | nucleus | 62.87 | 64.81 |
| PGSC0003DMT400060922 | Potato | nucleus | 50.6 | 63.06 |
| Solyc10g080780.1.1 | Tomato | cytosol | 50.3 | 62.45 |
| KRG93068 | Soybean | nucleus | 80.54 | 60.59 |
| VIT_08s0007g05170.t01 | Wine grape | nucleus | 80.24 | 59.42 |
| VIT_13s0084g00660.t01 | Wine grape | nucleus | 82.63 | 58.85 |
| TraesCS1B01G127400.1 | Wheat | nucleus | 59.88 | 58.82 |
| PGSC0003DMT400060926 | Potato | nucleus | 74.85 | 57.74 |
| KRH20680 | Soybean | nucleus | 79.64 | 56.72 |
| Solyc10g080770.1.1 | Tomato | nucleus | 74.85 | 55.56 |
| KRG95103 | Soybean | nucleus | 76.05 | 55.34 |
| KRH66771 | Soybean | nucleus | 75.75 | 55.0 |
| TraesCS3B01G365100.1 | Wheat | nucleus | 78.44 | 54.93 |
| KRH13334 | Soybean | nucleus | 79.64 | 53.52 |
| TraesCS7B01G114300.1 | Wheat | nucleus | 62.28 | 46.43 |
| GSMUA_Achr8P21670_001 | Banana | nucleus | 80.84 | 46.39 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 48.2 | 37.01 |
| TraesCS4B01G135000.1 | Wheat | nucleus | 56.59 | 33.39 |
| TraesCS6B01G193200.2 | Wheat | nucleus | 43.71 | 31.88 |
| TraesCS1B01G285800.1 | Wheat | nucleus | 48.5 | 30.8 |
| TraesCS5B01G265300.1 | Wheat | nucleus | 48.2 | 30.61 |
| TraesCS3B01G404800.2 | Wheat | nucleus | 52.1 | 30.37 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | MapMan:26.8.3.1.2 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR004827 | InterPro:IPR025422 | PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 |
| PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF220 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain |
| EnsemblPlantsGene:TraesCS4B01G178600 | EnsemblPlants:TraesCS4B01G178600.1 | InterPro:bZIP | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4B:+:391538483..391541374
Molecular Weight (calculated)
37270.4 Da
IEP (calculated)
8.459
GRAVY (calculated)
-0.513
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MADASSRTDT SIVVDTDDKN QRMENGQNGA IVPSNSSEPS DRSDRPMDQK VLRRLAQNRE AARKSRLRKK AYVQQLESSK LKLASLEQEL QKARQQGIFI
101: SSSGDQTHAM SGNGAMTFDL EYTRWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEIFKLKGAA AKADVFHMLS GMWKTPAERC FLWLGGFRSS
201: ELLKLLVNQL EPLTEQQLMG LSSLEQSSHQ AEDALSQGME ALQQSLAETL AGSLGPSGSS GNVANYMGQM AMAMGKLGTL ENFLRQADNL RQQTLHQMQR
301: ILTIRQAARA LLAIHDYFSR LRALSSLWLA RPRE
101: SSSGDQTHAM SGNGAMTFDL EYTRWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEIFKLKGAA AKADVFHMLS GMWKTPAERC FLWLGGFRSS
201: ELLKLLVNQL EPLTEQQLMG LSSLEQSSHQ AEDALSQGME ALQQSLAETL AGSLGPSGSS GNVANYMGQM AMAMGKLGTL ENFLRQADNL RQQTLHQMQR
301: ILTIRQAARA LLAIHDYFSR LRALSSLWLA RPRE
001: MADTSPRTDV STDDDTDHPD LGSEGALVNT AASDSSDRSK GKMDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISGTG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNKQMN ELRSALNAHA GDSELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQLMGINNL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT
301: RQSARALLAI HDYFSRLRAL SSLWLARPRE
101: DQAHSTGGNG ALAFDAEHSR WLEEKNKQMN ELRSALNAHA GDSELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQLMGINNL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT
301: RQSARALLAI HDYFSRLRAL SSLWLARPRE
Arabidopsis Description
TGA2BZIP transcription factor TGA2 [Source:UniProtKB/TrEMBL;Acc:B2BDR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.