CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93068
KRG94592
KRH01571
KRH06898
KRH13334
KRH20680
KRH36324
KRH37416
KRH66789
KRH70543
KRH72058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	KRH37416	AT1G64280.1	10659709
AT5G06960.1	KRH37416	AT1G64280.1	10662863
AT5G06960.1	KRH37416	AT1G64280.1	12383081
AT5G06960.1	KRH37416	AT1G64280.1	15634206
AT5G06960.1	KRH66789	AT2G41370.1	21798944
AT5G06960.1	KRH72058	AT2G41370.1	21798944
AT5G06960.1	KRG94592	AT3G02000.1	19218396
AT5G06960.1	KRH01571	AT3G02000.1	19218396
AT5G06960.1	KRH06898	AT3G02000.1	19218396
AT5G06960.1	KRH70543	AT3G02000.1	19218396
AT5G06960.1	KRG93068	AT5G06960.1	17098811
AT5G06960.1	KRH13334	AT5G06960.1	17098811
AT5G06960.1	KRH20680	AT5G06960.1	17098811
AT5G06960.1	KRH36324	AT5G06960.1	17098811
AT5G06960.1	KRG93068	AT5G06960.1	21798944
AT5G06960.1	KRH13334	AT5G06960.1	21798944
AT5G06960.1	KRH20680	AT5G06960.1	21798944
AT5G06960.1	KRH36324	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36324	Soybean	nucleus	63.97	90.36
KRH13334	Soybean	nucleus	90.41	85.31
Solyc11g064950.1.1	Tomato	nucleus	58.85	85.19
PGSC0003DMT400024428	Potato	nucleus	58.85	85.19
GSMUA_Achr3P25020_001	Banana	nucleus	59.49	84.04
GSMUA_Achr8P05800_001	Banana	nucleus	59.49	84.04
KRG93068	Soybean	nucleus	79.53	84.01
Os01t0279900-01	Rice	nucleus	57.57	82.07
EES02530	Sorghum	nucleus	57.36	81.52
Os03t0318600-01	Rice	nucleus	57.78	81.38
TraesCS3A01G190700.2	Wheat	nucleus	57.14	80.72
TraesCS3B01G220400.2	Wheat	nucleus	57.14	80.72
KXG39494	Sorghum	nucleus	57.57	80.6
CDY08443	Canola	nucleus	56.72	80.36
TraesCS3D01G194800.2	Wheat	nucleus	56.72	80.12
Bra034767.1-P	Field mustard	nucleus	56.5	80.06
HORVU3Hr1G042790.4	Barley	nucleus	56.5	80.06
AT5G06950.5	Thale cress	nucleus	56.29	80.0
HORVU4Hr1G052330.3	Barley	nucleus	56.72	79.64
TraesCS4B01G178600.1	Wheat	nucleus	56.72	79.64
TraesCS4A01G126300.2	Wheat	nucleus	56.72	79.4
TraesCS4D01G180200.4	Wheat	nucleus	56.72	79.4
Zm00001d022542_P002	Maize	nucleus	56.29	79.28
Solyc01g008730.2.1	Tomato	nucleus	55.22	79.2
TraesCS2D01G096800.2	Wheat	nucleus	56.72	79.17
TraesCS2B01G113200.2	Wheat	nucleus	56.72	79.17
Os07t0687700-01	Rice	nucleus	56.29	79.04
Bra009241.1-P	Field mustard	nucleus	52.24	79.03
KXG36997	Sorghum	nucleus	56.08	78.98
TraesCS2A01G097500.2	Wheat	nucleus	56.5	78.87
AT5G06960.1	Thale cress	nucleus	55.22	78.48
CDY50562	Canola	nucleus	55.86	78.44
Bra038705.1-P	Field mustard	nucleus	55.86	78.44
CDY52616	Canola	nucleus	55.65	78.38
CDX70053	Canola	nucleus	54.58	78.29
CDY00762	Canola	nucleus	55.22	78.25
CDX98971	Canola	nucleus	54.58	78.05
Bra001443.1-P	Field mustard	nucleus	55.01	77.95
CDX73830	Canola	nucleus	55.01	77.95
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	24.73	77.85
Bra028713.1-P	Field mustard	nucleus	53.3	76.69
CDY14061	Canola	nucleus	53.3	76.69
CDY05010	Canola	nucleus	53.09	76.38
VIT_13s0084g00660.t01	Wine grape	nucleus	76.12	76.12
HORVU2Hr1G016580.5	Barley	nucleus	54.37	75.67
AT3G12250.4	Thale cress	nucleus	56.93	75.21
PGSC0003DMT400026710	Potato	mitochondrion	27.93	74.43
KRH66777	Soybean	nucleus	44.14	71.38
GSMUA_Achr10P...	Banana	nucleus	68.44	70.24
CDY42138	Canola	nucleus	48.4	70.06
KXG22247	Sorghum	nucleus	48.4	68.37
KRG95103	Soybean	nucleus	66.52	67.97
KRH66771	Soybean	nucleus	66.1	67.39
Zm00001d008225_P001	Maize	nucleus	60.34	67.38
EES03778	Sorghum	nucleus	65.67	65.81
GSMUA_Achr11P...	Banana	nucleus	66.95	65.69
TraesCS3A01G334100.1	Wheat	nucleus	64.82	64.0
Os05t0492000-00	Rice	nucleus	44.99	63.94
HORVU3Hr1G079010.5	Barley	nucleus	64.82	63.73
TraesCS3B01G365100.1	Wheat	nucleus	64.39	63.31
TraesCS3D01G327600.1	Wheat	nucleus	64.39	63.31
Zm00001d028936_P001	Maize	nucleus	52.67	63.17
Zm00001d010658_P001	Maize	nucleus	45.2	61.45
Zm00001d043153_P001	Maize	nucleus	54.58	60.66
TraesCS1A01G096300.1	Wheat	nucleus	43.07	60.3
TraesCS1B01G127400.1	Wheat	nucleus	42.64	58.82
TraesCS1D01G105300.1	Wheat	nucleus	42.43	58.7
Zm00001d012553_P003	Maize	nucleus	57.36	57.23
Os01t0808100-01	Rice	nucleus	43.28	55.77
KRH35977	Soybean	nucleus	53.73	55.26
HORVU1Hr1G068220.1	Barley	nucleus	40.09	54.81
KRG90784	Soybean	nucleus	52.88	54.51
KRG97639	Soybean	nucleus	41.58	53.87
KRH63045	Soybean	cytosol	10.66	53.19
KRH70569	Soybean	nucleus	52.88	53.1
KRH31239	Soybean	nucleus	40.94	52.75
KRH75411	Soybean	nucleus	53.73	51.85
KRH59415	Soybean	nucleus	39.23	49.73
KRH21813	Soybean	nucleus	17.06	49.69
KRH43266	Soybean	nucleus	39.66	49.08
KRH53141	Soybean	nucleus	35.61	47.04
KRH18838	Soybean	nucleus	36.03	45.68
KRH64780	Soybean	nucleus	34.97	45.3
KRH16629	Soybean	nucleus	35.39	44.86
KRH39187	Soybean	cytosol, extracellular, nucleus	16.84	44.38
HORVU0Hr1G032230.4	Barley	nucleus	32.2	43.02
KRH67029	Soybean	nucleus	44.56	42.57
KRG95350	Soybean	nucleus	44.14	42.16
KRH26635	Soybean	nucleus	43.28	41.6
KRH22685	Soybean	nucleus	43.07	41.22
KRG92164	Soybean	nucleus	20.47	40.85
KRH71904	Soybean	nucleus	42.0	40.7
KRH30432	Soybean	nucleus	42.64	40.57
KRH25227	Soybean	nucleus	42.86	40.12
KRH34622	Soybean	cytosol	18.98	38.53
KRH32997	Soybean	nucleus	41.58	37.72

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EntrezGene:778190	UniProt:A0A0R0GZ65
EMBL:ACUP02008290	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G193700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422
ProteinID:KRH20679.1	EnsemblPlants:KRH20680	ProteinID:KRH20680	ProteinID:KRH20680.1	PFAM:PF07716	PFAM:PF14144
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF244	SMART:SM00338
SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0001B64176	InterPro:bZIP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:30682181..30695761

Molecular Weight (calculated)

51993.0 Da

IEP (calculated)

6.364

GRAVY (calculated)

-0.587

Length

469 amino acids

Sequence
(BLAST)

001: MGSRTTWRVV GVEDDKGAER GMPSFNSELP NSNSCYTEGN TIDSFRVSDF GAFDQSYHIE DAVDLSGNPV YNSLKVNSQT ISPGSVHISS LGQLPISLEK
101: SPLTNQTEPP HRLRLQKVQS SNPGTILVGN TDNWEESTMA DASPRTDIST DGDTDDKNHP FDRNQALTAV SDSSDRSKDK SDQKTLRRLA QNREAARKSR
201: LRKKAYVQQL ESSRLKLTQL EQELQRARQQ GIFISSSGDQ AHTLSGNGAM QFDAEYARWL EEQNRQINEL RAAVNSHASD TELRMIVDGI LAHYDEIFRL
301: KGVAAKADVF HLLSGMWKTP AERCFLWLGG FRSSELLKLL VSQLEPLTEQ QLMGITNLQQ SSQQAEDALS QGMEALQQSL AETLSTGAPA SSGSSGNVAS
401: YMGQMAMAMG KLGTLEGFIQ QADNLRQQTL QQMHRILTTR QSARALLAIH DYISRLRALS SLWLARPRD

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.