CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95350	Soybean	nucleus	95.93	95.93
KRH71904	Soybean	nucleus	78.62	79.75
VIT_08s0007g06160.t01	Wine grape	nucleus	75.97	75.97
PGSC0003DMT400029743	Potato	nucleus, plastid	57.64	74.47
KRH32997	Soybean	nucleus	78.41	74.47
Bra009233.1-P	Field mustard	cytosol	39.92	70.0
GSMUA_Achr9P27700_001	Banana	nucleus	52.34	68.53
PGSC0003DMT400060865	Potato	nucleus	64.15	68.33
CDY71150	Canola	nucleus, plastid	27.49	68.18
Solyc10g080410.1.1	Tomato	nucleus	63.14	67.54
Solyc10g078670.1.1	Tomato	nucleus	66.8	67.35
CDX70061	Canola	nucleus	61.51	66.96
CDX98963	Canola	nucleus	61.51	66.96
GSMUA_Achr3P11150_001	Banana	nucleus	56.42	66.91
AT5G06839.3	Thale cress	nucleus	61.71	65.87
Bra005914.1-P	Field mustard	nucleus	57.23	64.75
CDY70235	Canola	nucleus	47.66	64.29
CDY70714	Canola	nucleus	45.42	63.35
CDY70396	Canola	mitochondrion	26.27	61.72
KRH36324	Soybean	nucleus	40.73	60.24
Zm00001d020938_P002	Maize	nucleus	55.6	56.17
KXG35912	Sorghum	nucleus	56.21	55.2
KRH66777	Soybean	nucleus	32.38	54.83
GSMUA_Achr9P20200_001	Banana	plastid	58.04	52.1
Zm00001d006027_P002	Maize	nucleus	52.95	51.69
Os09t0489500-02	Rice	nucleus	54.79	51.43
TraesCS5D01G273500.1	Wheat	nucleus	52.75	50.0
TraesCS5A01G265600.1	Wheat	nucleus	52.55	49.81
TraesCS5B01G265300.1	Wheat	nucleus	53.16	49.62
KRH63045	Soybean	cytosol	9.16	47.87
KRG93068	Soybean	nucleus	42.77	47.3
KRG97639	Soybean	nucleus	34.62	46.96
KRH31239	Soybean	nucleus	34.62	46.7
HORVU5Hr1G073410.1	Barley	nucleus	53.36	46.21
KRG95103	Soybean	nucleus	41.75	44.66
KRH20680	Soybean	nucleus	42.57	44.56
KRH66771	Soybean	nucleus	41.55	44.35
KRH53141	Soybean	nucleus	31.77	43.94
KRH26635	Soybean	nucleus	43.38	43.65
KRG90784	Soybean	nucleus	40.33	43.52
KRH59415	Soybean	nucleus	32.59	43.24
KRH35977	Soybean	nucleus	40.12	43.2
KRH64780	Soybean	nucleus	31.77	43.09
KRH16629	Soybean	nucleus	32.38	42.97
KRH22685	Soybean	nucleus	42.77	42.86
KRH18838	Soybean	nucleus	32.18	42.7
KRH13334	Soybean	nucleus	42.77	42.25
KRH43266	Soybean	nucleus	32.59	42.22
KRH30432	Soybean	nucleus	42.36	42.19
KRH25227	Soybean	nucleus	42.97	42.12
KRH21813	Soybean	nucleus	13.65	41.61
KRH75411	Soybean	nucleus	40.53	40.95
KRH70569	Soybean	nucleus	38.9	40.9
KRH39187	Soybean	cytosol, extracellular, nucleus	14.46	39.89
KRG92164	Soybean	nucleus	16.7	34.89
KRH34622	Soybean	cytosol	15.48	32.9

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100815176	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EMBL:ACUP02002024	ncoils:Coil
EnsemblPlantsGene:GLYMA_03G142400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:K7KF09	EnsemblPlants:KRH67029
ProteinID:KRH67029	ProteinID:KRH67029.1	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF241	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain
UniParc:UPI000233A018	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:35809857..35816983

Molecular Weight (calculated)

55203.5 Da

IEP (calculated)

8.269

GRAVY (calculated)

-0.659

Length

491 amino acids

Sequence
(BLAST)

001: MMASSKTTNP ITTTTQLEPL PPPQHRHHPH HLHQLQQQQH QHHYHQQIHD HQISFGLMQS SSSSSSIPGN YLGSKDSGAY DLGELDQAFF LYLDGQADPS
101: SVQDQRQNSS SGMRPPTLNI FPSKPMHVEP SSSKSKANIE LVSPQTSGSK RPSEPSMELA NPRNETASAP QPPKPVKREG NRKGPTSSSE HEGPKTPDPK
201: TLRRLAQNRE AARKSRLRKK AYVQQLESSR IRLNQLEQEL QRARTQGMFL GGGALLGGEQ GLPVTMNTIS TEAAMFDVEY ARWQEENHRI VCELRAAVQE
301: HLPENELRLF VDNCLAHYDQ VMNLKSLVAK TDVFHLVSGM WKTPAERCFM WIGGFRPSEL IKIIVSQIEP LTEQQILGIC GLQQSTQEAE EALSQGLEAL
401: NQSLSDTITS DSLSYPPNMA NYMGQMAVAM NKLSTLEGFV RQADNLRHQT IHRLHQILTT RQAARCFLAI AEYFHRLRAL SSLWLARPRQ E

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.