CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97639	Soybean	nucleus	96.15	96.69
VIT_07s0031g01320.t01	Wine grape	nucleus	71.15	74.21
KRH59415	Soybean	nucleus	73.08	71.89
KRH43266	Soybean	nucleus	73.63	70.71
AT5G10030.3	Thale cress	nucleus	69.23	69.23
Bra028604.1-P	Field mustard	nucleus	67.86	68.23
CDY40074	Canola	nucleus	67.86	68.23
CDX85782	Canola	nucleus	67.86	68.23
AT5G65210.2	Thale cress	nucleus	68.68	67.93
CDY08810	Canola	nucleus	67.31	66.76
Bra024366.1-P	Field mustard	nucleus	67.31	66.76
GSMUA_Achr5P16630_001	Banana	nucleus	66.48	66.3
CDY14552	Canola	nucleus	66.48	65.94
CDX69866	Canola	nucleus	65.93	65.93
Bra009063.1-P	Field mustard	nucleus	65.93	65.93
CDY33975	Canola	nucleus	66.76	65.68
CDY37811	Canola	nucleus	66.48	65.41
Bra031871.1-P	Field mustard	nucleus	66.48	65.41
CDY21625	Canola	nucleus	65.38	65.38
CDY18683	Canola	cytosol	64.56	63.17
PGSC0003DMT400033308	Potato	nucleus	61.26	62.64
CDX81273	Canola	nucleus	65.93	61.7
Solyc04g054320.2.1	Tomato	nucleus	62.64	61.62
Solyc04g011670.2.1	Tomato	nucleus	62.91	61.23
GSMUA_AchrUn_...	Banana	nucleus	57.97	59.6
GSMUA_Achr10P...	Banana	nucleus	57.14	59.26
Bra037809.1-P	Field mustard	nucleus	63.46	58.93
Zm00001d016312_P001	Maize	cytosol	14.29	55.91
KRH36324	Soybean	nucleus	50.55	55.42
PGSC0003DMT400016235	Potato	nucleus	58.24	54.08
KRH66777	Soybean	nucleus	42.86	53.79
KRH53141	Soybean	nucleus	51.37	52.68
KRH16629	Soybean	nucleus	53.02	52.16
KRH18838	Soybean	nucleus	53.02	52.16
Os04t0637000-01	Rice	nucleus	56.59	51.89
KRH64780	Soybean	nucleus	51.37	51.66
KRH63045	Soybean	cytosol	12.91	50.0
KXG27222	Sorghum	nucleus	54.67	48.77
Bra037374.1-P	Field mustard	nucleus	40.66	47.13
TraesCS2A01G526300.1	Wheat	nucleus	53.57	46.54
KRG92164	Soybean	nucleus	29.95	46.38
TraesCS2D01G529000.1	Wheat	nucleus	53.57	45.88
Zm00001d026398_P006	Maize	nucleus	51.92	45.87
TraesCS2B01G556600.1	Wheat	nucleus	54.67	45.75
KXG38496	Sorghum	nucleus	39.01	45.66
KRH34622	Soybean	cytosol	28.57	45.02
Zm00001d024160_P003	Maize	nucleus	50.82	43.63
KRG93068	Soybean	nucleus	51.92	42.57
Os08t0176900-01	Rice	nucleus	44.51	41.65
KRG95103	Soybean	nucleus	52.2	41.39
KRH20680	Soybean	nucleus	52.75	40.94
Zm00001d002143_P002	Maize	cytosol	49.18	40.77
KRH66771	Soybean	nucleus	51.37	40.65
Zm00001d041428_P001	Maize	cytosol	17.03	39.74
KRH35977	Soybean	nucleus	48.9	39.04
KRG90784	Soybean	nucleus	48.35	38.68
KRH13334	Soybean	nucleus	51.37	37.63
KRH70569	Soybean	nucleus	48.08	37.47
OQU79985	Sorghum	golgi, vacuole	52.47	37.02
KRH75411	Soybean	nucleus	48.63	36.42
KRH21813	Soybean	nucleus	15.93	36.02
KRH71904	Soybean	nucleus	46.98	35.33
KRH30432	Soybean	nucleus	47.8	35.29
KRH22685	Soybean	nucleus	47.25	35.1
KRH26635	Soybean	nucleus	46.98	35.04
KRH67029	Soybean	nucleus	46.7	34.62
KRG95350	Soybean	nucleus	46.43	34.42
KRH25227	Soybean	nucleus	46.98	34.13
KRH32997	Soybean	nucleus	46.98	33.08
KRH39187	Soybean	cytosol, extracellular, nucleus	15.66	32.02
HORVU2Hr1G116090.2	Barley	cytosol	33.79	29.08

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EntrezGene:548066	EMBL:ACUP02007132	ncoils:Coil
EnsemblPlantsGene:GLYMA_11G236300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:K7LRT7	EnsemblPlants:KRH31239
ProteinID:KRH31239	ProteinID:KRH31239.1	ProteinID:KRH31240.1	ProteinID:KRH31241.1	ProteinID:KRH31242.1	ProteinID:KRH31243.1
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF180	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI00029482C1	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:33113090..33117266

Molecular Weight (calculated)

41181.3 Da

IEP (calculated)

6.731

GRAVY (calculated)

-0.464

Length

364 amino acids

Sequence
(BLAST)

001: MNSASPQFVS PRSMSVYDPI HQISMWGEGF KSNGNLSAAM PLIDEADMKF DSQSEDASHG ILGEPNKYDQ EASKPTDKIQ RRLAQNREAA RKSRLRKKAY
101: VQQLESSRLK LMQLEQELER ARQQGMYIGG GLDSNHLGFA GSVNSVAGIT TFEMEYGHWV NEQNRQITEL RNALNAHIGD VELRILVDGM MSHYAEMFRM
201: KSAAAKADVF YVMSGMWKTT AERFFLWIGG FHPSELLKVL GPLIEPLTEQ QRLNIYNLGQ SCQQAEDALS QGMDKLRQTL ADSVAAGQFM EGTYIPQMTS
301: AMEKLEDLVS FVKQADHLRQ ETLEQMSRIL TIRQAARCLL ALGEYFQRLR ALSSLWSNRP REPA

Best Arabidopsis Sequence Match ( AT5G10030.1 )
(BLAST)

001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT

Arabidopsis Description

TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.