Factsheet for GSMUA_AchrUn_randomP13810_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P16670_001
GSMUA_Achr3P18710_001
GSMUA_Achr3P25880_001
GSMUA_Achr6P00950_001
GSMUA_Achr6P23860_001
GSMUA_Achr7P09190_001
GSMUA_Achr8P05490_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	GSMUA_Achr2P16670_001	AT1G64280.1	10659709
AT1G22070.1	GSMUA_Achr3P25880_001	AT1G64280.1	10659709
AT1G22070.1	GSMUA_Achr6P00950_001	AT1G64280.1	10659709
AT1G22070.1	GSMUA_Achr7P09190_001	AT1G64280.1	10659709
AT1G22070.1	GSMUA_Achr8P05490_001	AT1G64280.1	10659709
AT1G22070.1	GSMUA_AchrUn_...	AT1G64280.1	10659709
AT1G22070.1	GSMUA_Achr2P16670_001	AT1G64280.1	10662863
AT1G22070.1	GSMUA_Achr3P25880_001	AT1G64280.1	10662863
AT1G22070.1	GSMUA_Achr6P00950_001	AT1G64280.1	10662863
AT1G22070.1	GSMUA_Achr7P09190_001	AT1G64280.1	10662863
AT1G22070.1	GSMUA_Achr8P05490_001	AT1G64280.1	10662863
AT1G22070.1	GSMUA_AchrUn_...	AT1G64280.1	10662863
AT1G22070.1	GSMUA_Achr2P16670_001	AT1G64280.1	15634206
AT1G22070.1	GSMUA_Achr3P25880_001	AT1G64280.1	15634206
AT1G22070.1	GSMUA_Achr6P00950_001	AT1G64280.1	15634206
AT1G22070.1	GSMUA_Achr7P09190_001	AT1G64280.1	15634206
AT1G22070.1	GSMUA_Achr8P05490_001	AT1G64280.1	15634206
AT1G22070.1	GSMUA_AchrUn_...	AT1G64280.1	15634206
AT1G22070.1	GSMUA_Achr2P16670_001	AT1G64280.1	21798944
AT1G22070.1	GSMUA_Achr3P25880_001	AT1G64280.1	21798944
AT1G22070.1	GSMUA_Achr6P00950_001	AT1G64280.1	21798944
AT1G22070.1	GSMUA_Achr7P09190_001	AT1G64280.1	21798944
AT1G22070.1	GSMUA_Achr8P05490_001	AT1G64280.1	21798944
AT1G22070.1	GSMUA_AchrUn_...	AT1G64280.1	21798944
AT1G22070.1	GSMUA_Achr10P...	AT3G02000.1	19218396
AT1G22070.1	GSMUA_Achr3P18710_001	AT3G02000.1	19218396
AT1G22070.1	GSMUA_Achr6P23860_001	AT3G02000.1	19218396
AT1G22070.1	GSMUA_AchrUn_...	AT3G02000.1	19218396
AT1G77920.1	GSMUA_Achr2P16670_001	AT1G64280.1	10662863
AT1G77920.1	GSMUA_Achr3P25880_001	AT1G64280.1	10662863
AT1G77920.1	GSMUA_Achr6P00950_001	AT1G64280.1	10662863
AT1G77920.1	GSMUA_Achr7P09190_001	AT1G64280.1	10662863
AT1G77920.1	GSMUA_Achr8P05490_001	AT1G64280.1	10662863
AT1G77920.1	GSMUA_AchrUn_...	AT1G64280.1	10662863
AT1G77920.1	GSMUA_Achr2P16670_001	AT1G64280.1	15634206
AT1G77920.1	GSMUA_Achr3P25880_001	AT1G64280.1	15634206
AT1G77920.1	GSMUA_Achr6P00950_001	AT1G64280.1	15634206
AT1G77920.1	GSMUA_Achr7P09190_001	AT1G64280.1	15634206
AT1G77920.1	GSMUA_Achr8P05490_001	AT1G64280.1	15634206
AT1G77920.1	GSMUA_AchrUn_...	AT1G64280.1	15634206
AT1G77920.1	GSMUA_Achr10P...	AT3G02000.1	19218396
AT1G77920.1	GSMUA_Achr3P18710_001	AT3G02000.1	19218396
AT1G77920.1	GSMUA_Achr6P23860_001	AT3G02000.1	19218396
AT1G77920.1	GSMUA_AchrUn_...	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	78.81	79.49
GSMUA_Achr5P16630_001	Banana	nucleus	76.84	74.52
VIT_07s0031g01320.t01	Wine grape	nucleus	65.25	66.19
VIT_18s0001g04470.t01	Wine grape	nucleus	63.84	62.26
Bra015646.1-P	Field mustard	nucleus	57.06	59.59
AT5G10030.3	Thale cress	nucleus	60.73	59.07
Bra024366.1-P	Field mustard	nucleus	61.02	58.86
CDY08810	Canola	nucleus	61.02	58.86
KRG97639	Soybean	nucleus	60.17	58.84
CDX85782	Canola	nucleus	59.89	58.56
Bra028604.1-P	Field mustard	nucleus	59.89	58.56
Solyc12g056860.1.1	Tomato	nucleus	57.06	58.05
KRH31239	Soybean	nucleus	59.6	57.97
AT5G65210.2	Thale cress	nucleus	60.17	57.88
CDY14552	Canola	nucleus	59.89	57.77
CDX69866	Canola	nucleus	59.32	57.69
Bra009063.1-P	Field mustard	nucleus	59.32	57.69
CDY40074	Canola	nucleus	58.76	57.46
CDY33975	Canola	nucleus	59.32	56.76
CDY37811	Canola	nucleus	59.32	56.76
Bra031871.1-P	Field mustard	nucleus	59.32	56.76
PGSC0003DMT400033308	Potato	nucleus	57.06	56.74
AT1G77920.1	Thale cress	nucleus	58.47	56.25
Solyc04g072460.2.1	Tomato	nucleus	57.34	56.23
CDY21625	Canola	nucleus	57.63	56.04
GSMUA_Achr8P05800_001	Banana	nucleus	52.26	55.72
PGSC0003DMT400070884	Potato	nucleus	56.78	55.68
KRH59415	Soybean	nucleus	58.19	55.68
CDX68037	Canola	nucleus	58.19	55.53
Solyc04g054320.2.1	Tomato	nucleus	57.91	55.41
CDY18683	Canola	cytosol	57.91	55.11
PGSC0003DMT400043651	Potato	nucleus	55.93	54.85
Solyc04g011670.2.1	Tomato	nucleus	57.34	54.28
CDX81273	Canola	nucleus	59.6	54.24
GSMUA_Achr3P25020_001	Banana	nucleus	50.85	54.22
KRH53141	Soybean	nucleus	54.24	54.08
Bra016389.1-P	Field mustard	nucleus	56.21	54.08
CDY41495	Canola	nucleus	56.21	53.93
AT1G22070.1	Thale cress	nucleus	58.47	53.91
KRH43266	Soybean	nucleus	57.63	53.83
CDY38843	Canola	nucleus	56.21	53.78
Bra031364.1-P	Field mustard	nucleus	57.34	53.7
KRH63045	Soybean	cytosol	14.12	53.19
CDY38253	Canola	nucleus	57.06	52.47
KRH64780	Soybean	nucleus	53.11	51.93
KRH16629	Soybean	nucleus	54.24	51.89
Bra037809.1-P	Field mustard	nucleus	57.34	51.79
KRH18838	Soybean	nucleus	53.67	51.35
PGSC0003DMT400016235	Potato	nucleus	54.8	49.49
GSMUA_Achr11P...	Banana	cytosol	33.05	48.35
CDY21336	Canola	nucleus	57.06	48.33
CDX88399	Canola	nucleus	57.63	47.44
CDX87494	Canola	nucleus	58.19	46.4
GSMUA_Achr9P27700_001	Banana	nucleus	46.05	43.47
GSMUA_Achr10P...	Banana	nucleus	53.39	41.36
GSMUA_Achr9P15550_001	Banana	nucleus	49.72	41.03
Bra037374.1-P	Field mustard	nucleus	35.88	40.45
GSMUA_Achr11P...	Banana	nucleus	53.11	39.33
GSMUA_Achr3P11150_001	Banana	nucleus	45.48	38.89
KRG92164	Soybean	nucleus	25.42	38.3
GSMUA_AchrUn_...	Banana	nucleus	51.98	37.4
KRH34622	Soybean	cytosol	23.45	35.93
GSMUA_Achr5P26200_001	Banana	nucleus	40.96	35.71
GSMUA_Achr10P...	Banana	nucleus	46.89	35.17
GSMUA_Achr2P06770_001	Banana	nucleus	46.61	34.52
GSMUA_Achr11P...	Banana	nucleus	47.74	34.35
GSMUA_Achr3P22700_001	Banana	nucleus	46.33	32.41
GSMUA_Achr8P21670_001	Banana	nucleus	52.54	31.96
CDX79240	Canola	nucleus	51.41	31.93
GSMUA_Achr9P20200_001	Banana	plastid	45.2	29.25
GSMUA_Achr11P...	Banana	nucleus	17.8	20.39

Protein Annotations

Gene3D:1.20.120.1490	Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSMUA_AchrUn_randomG13810_001	EnsemblPlants:GSMUA_AchrUn_randomP13810_001	EnsemblPlants:GSMUA_AchrUn_randomT13810_001	InterPro:IPR004827	InterPro:IPR025422	UniProt:M0U8Z0
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF180	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0002957D4D	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

Transcription factor TGA4 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13810_001]

Coordinates

chrchrUn_random:-:65389925..65395054

Molecular Weight (calculated)

39952.3 Da

IEP (calculated)

6.327

GRAVY (calculated)

-0.544

Length

354 amino acids

Sequence
(BLAST)

001: MGIYEPNHQI GMWEDSFKAD SSQNTCASTI VETDTKLDYM AELEDIPRKE LGQPKKYGQE TSHSSDKVLR RLAQNREAAK KSRLRKKAYV QQLESSRLKL
101: AQLEQELEQA RQQAVYIGGH LRETNIGLSG SVNSGIAAFE MEYGHWVEEQ NRQTSDLRTA LQAHASDVEL EMLVESGIRH YDNLFRIKAV TAKSDVFYLI
201: SGMWRTPTER FFLWIGGFRP SELLKVVSSQ LDPMTEQQKS AVSGLRQSSQ QAEDALSQGL ERLQETLSET LTCDPSGTPG VTNYMEQMAN AMGKLEALVS
301: FVNQADLLRQ QALRQMYSIL TTHQAARGLL ALGDYFQRLR ALSSLWAARP HDPT

Best Arabidopsis Sequence Match ( AT5G10030.2 )
(BLAST)

001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT

Arabidopsis Description

TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.