CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34622	Soybean	cytosol	85.96	87.45
KRH63045	Soybean	cytosol	17.02	42.55
Zm00001d016312_P001	Maize	cytosol	15.74	39.78
VIT_07s0031g01320.t01	Wine grape	nucleus	46.38	31.23
KRG97639	Soybean	nucleus	46.81	30.39
KRH31239	Soybean	nucleus	46.38	29.95
KRH36324	Soybean	nucleus	42.13	29.82
KRH66777	Soybean	nucleus	36.6	29.66
KRH59415	Soybean	nucleus	46.38	29.46
Bra009063.1-P	Field mustard	nucleus	45.53	29.4
AT5G10030.3	Thale cress	nucleus	45.53	29.4
CDX69866	Canola	nucleus	45.53	29.4
AT5G65210.2	Thale cress	nucleus	45.53	29.08
CDY40074	Canola	nucleus	44.26	28.73
Bra028604.1-P	Field mustard	nucleus	44.26	28.73
CDX85782	Canola	nucleus	44.26	28.73
Bra024366.1-P	Field mustard	nucleus	44.26	28.34
CDY14552	Canola	nucleus	44.26	28.34
CDY08810	Canola	nucleus	44.26	28.34
CDY21625	Canola	nucleus	43.83	28.3
KRH43266	Soybean	nucleus	45.53	28.23
GSMUA_Achr5P16630_001	Banana	nucleus	42.98	27.67
CDY33975	Canola	nucleus	43.4	27.57
CDY37811	Canola	nucleus	43.4	27.57
Bra031871.1-P	Field mustard	nucleus	43.4	27.57
PGSC0003DMT400033308	Potato	nucleus	41.28	27.25
CDY18683	Canola	cytosol	42.55	26.88
CDX81273	Canola	nucleus	43.4	26.22
Solyc04g054320.2.1	Tomato	nucleus	41.28	26.22
GSMUA_Achr10P...	Banana	nucleus	38.72	25.93
KRH53141	Soybean	nucleus	39.15	25.92
Zm00001d041428_P001	Maize	cytosol	17.02	25.64
GSMUA_AchrUn_...	Banana	nucleus	38.3	25.42
KRH64780	Soybean	nucleus	38.72	25.14
Solyc04g011670.2.1	Tomato	nucleus	39.57	24.87
KRH16629	Soybean	nucleus	39.15	24.86
Bra037809.1-P	Field mustard	nucleus	40.85	24.49
KRH18838	Soybean	nucleus	38.3	24.32
PGSC0003DMT400016235	Potato	nucleus	40.0	23.98
KRG93068	Soybean	nucleus	41.7	22.07
KXG27222	Sorghum	nucleus	37.87	21.81
Zm00001d026398_P006	Maize	nucleus	37.87	21.6
KRG90784	Soybean	nucleus	41.7	21.54
Os04t0637000-01	Rice	nucleus	36.17	21.41
KRH35977	Soybean	nucleus	41.28	21.27
TraesCS2A01G526300.1	Wheat	nucleus	37.02	20.76
KRH20680	Soybean	nucleus	40.85	20.47
KRH66771	Soybean	nucleus	40.0	20.43
KRG95103	Soybean	nucleus	39.57	20.26
Zm00001d002143_P002	Maize	cytosol	37.02	19.82
TraesCS2D01G529000.1	Wheat	nucleus	35.74	19.76
Zm00001d024160_P003	Maize	nucleus	35.32	19.58
TraesCS2B01G556600.1	Wheat	nucleus	35.74	19.31
Bra037374.1-P	Field mustard	nucleus	25.53	19.11
KRH30432	Soybean	nucleus	40.0	19.07
KRH70569	Soybean	nucleus	37.87	19.06
KRH26635	Soybean	nucleus	39.57	19.06
KRH22685	Soybean	nucleus	39.57	18.98
KRH13334	Soybean	nucleus	40.0	18.91
KRH25227	Soybean	nucleus	39.15	18.36
KRH75411	Soybean	nucleus	37.87	18.31
KXG38496	Sorghum	nucleus	23.83	18.01
Os08t0176900-01	Rice	nucleus	28.94	17.48
HORVU2Hr1G116090.2	Barley	cytosol	31.06	17.26
KRH67029	Soybean	nucleus	34.89	16.7
KRG95350	Soybean	nucleus	34.89	16.7
KRH71904	Soybean	nucleus	34.04	16.53
OQU79985	Sorghum	golgi, vacuole	34.89	15.89
KRH32997	Soybean	nucleus	34.47	15.67
KRH21813	Soybean	nucleus	5.11	7.45
KRH39187	Soybean	cytosol, extracellular, nucleus	5.11	6.74

Protein Annotations

MapMan:15.5.4.7.1	EMBL:ACUP02012734	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G195100	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1NHU8	InterPro:IPR025422	EnsemblPlants:KRG92164
ProteinID:KRG92164	ProteinID:KRG92164.1	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF180
InterPro:TGA_domain	UniParc:UPI00023DC7C4	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:43349644..43352706

Molecular Weight (calculated)

26898.2 Da

IEP (calculated)

8.119

GRAVY (calculated)

-0.225

Length

235 amino acids

Sequence
(BLAST)

001: MSSSNQLNQS SRFLANKPRN EVNVQGYTFR IDGNTTFVMN YGRWSEKRKR LISEIRSALN VHNDQVLDDK LLFLIDTVMK HYFELFEMKT SAANLDVFSV
101: VSAIWCTTAE RNLLWIGGFR PSQLLQAILP QVQHSCSQQQ LSDIFSFVQS CQQAEDALAQ GMEKLQQNLD KATAAGDKAL KLTCVSQQMS FLKQANHVRQ
201: QFLYQLSRLL TICQYAEFLL AFGECLYNSQ PWSSL

Best Arabidopsis Sequence Match ( AT5G10030.1 )
(BLAST)

001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT

Arabidopsis Description

TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.