CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	34.14	66.44
KRH36324	Soybean	nucleus	71.72	62.65
Os01t0279900-01	Rice	nucleus	70.34	62.01
GSMUA_Achr8P05800_001	Banana	nucleus	70.69	61.75
GSMUA_Achr3P25020_001	Banana	nucleus	70.34	61.45
HORVU3Hr1G042790.4	Barley	nucleus	70.0	61.33
TraesCS3A01G190700.2	Wheat	nucleus	70.0	61.14
TraesCS3B01G220400.2	Wheat	nucleus	70.0	61.14
TraesCS3D01G194800.2	Wheat	nucleus	70.0	61.14
EES02530	Sorghum	nucleus	68.97	60.61
Os03t0318600-01	Rice	nucleus	68.97	60.06
KXG39494	Sorghum	nucleus	69.31	60.0
TraesCS4A01G126300.2	Wheat	nucleus	68.97	59.7
TraesCS4D01G180200.4	Wheat	nucleus	68.97	59.7
HORVU4Hr1G052330.3	Barley	nucleus	68.62	59.58
TraesCS4B01G178600.1	Wheat	nucleus	68.62	59.58
KXG36997	Sorghum	nucleus	67.59	58.86
Zm00001d022542_P002	Maize	nucleus	67.24	58.56
HORVU2Hr1G016580.5	Barley	nucleus	67.93	58.46
TraesCS2D01G096800.2	Wheat	nucleus	67.59	58.33
TraesCS2B01G113200.2	Wheat	nucleus	67.59	58.33
TraesCS2A01G097500.2	Wheat	nucleus	67.59	58.33
Os07t0687700-01	Rice	nucleus	66.9	58.08
KXG22247	Sorghum	nucleus	63.45	55.42
PGSC0003DMT400060922	Potato	nucleus	50.34	54.48
Solyc10g080780.1.1	Tomato	cytosol	49.31	53.16
KRH66771	Soybean	nucleus	83.1	52.39
KRG95103	Soybean	nucleus	82.07	51.85
Os05t0492000-00	Rice	nucleus	56.55	49.7
TraesCS1A01G096300.1	Wheat	nucleus	56.21	48.66
VIT_08s0007g05170.t01	Wine grape	nucleus	75.52	48.56
Zm00001d028936_P001	Maize	nucleus	65.17	48.34
Zm00001d010658_P001	Maize	nucleus	56.9	47.83
TraesCS1B01G127400.1	Wheat	nucleus	55.86	47.65
Zm00001d008225_P001	Maize	nucleus	68.97	47.62
KRG93068	Soybean	nucleus	72.41	47.3
TraesCS1D01G105300.1	Wheat	nucleus	55.17	47.2
PGSC0003DMT400060926	Potato	nucleus	68.97	46.19
GSMUA_Achr10P...	Banana	nucleus	71.38	45.3
Solyc10g080770.1.1	Tomato	nucleus	69.31	44.67
KRH20680	Soybean	nucleus	71.38	44.14
HORVU1Hr1G068220.1	Barley	nucleus	52.07	44.02
KRG97639	Soybean	nucleus	54.48	43.65
KRH63045	Soybean	cytosol	14.14	43.62
GSMUA_Achr11P...	Banana	nucleus	71.72	43.51
EES03778	Sorghum	nucleus	70.0	43.38
KRH31239	Soybean	nucleus	53.79	42.86
TraesCS3D01G327600.1	Wheat	nucleus	70.34	42.77
TraesCS3B01G365100.1	Wheat	nucleus	70.34	42.77
HORVU3Hr1G079010.5	Barley	nucleus	70.34	42.77
TraesCS3A01G334100.1	Wheat	nucleus	70.0	42.74
KRH13334	Soybean	nucleus	71.38	41.65
KRH59415	Soybean	nucleus	51.38	40.27
KRH43266	Soybean	nucleus	51.72	39.58
KRH53141	Soybean	nucleus	47.24	38.59
Zm00001d043153_P001	Maize	nucleus	55.86	38.39
KRH35977	Soybean	nucleus	60.0	38.16
KRH64780	Soybean	nucleus	46.55	37.29
KRG90784	Soybean	nucleus	57.93	36.92
KRG92164	Soybean	nucleus	29.66	36.6
Zm00001d012553_P003	Maize	nucleus	59.31	36.6
KRH70569	Soybean	nucleus	57.93	35.97
KRH18838	Soybean	nucleus	45.52	35.68
KRH16629	Soybean	nucleus	44.83	35.14
KRH75411	Soybean	nucleus	57.59	34.36
KRH34622	Soybean	cytosol	26.9	33.77
KRH71904	Soybean	nucleus	54.83	32.85
KRH67029	Soybean	nucleus	54.83	32.38
KRG95350	Soybean	nucleus	54.48	32.18
HORVU0Hr1G032230.4	Barley	nucleus	38.62	31.91
KRH32997	Soybean	nucleus	55.52	31.14
KRH25227	Soybean	nucleus	52.41	30.34
KRH26635	Soybean	nucleus	51.03	30.33
KRH30432	Soybean	nucleus	51.38	30.22
KRH22685	Soybean	nucleus	50.69	30.0
Os01t0808100-01	Rice	nucleus	37.59	29.95
KRH21813	Soybean	nucleus	14.83	26.71
KRH39187	Soybean	cytosol, extracellular, nucleus	14.48	23.6

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100801838	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EMBL:ACUP02002010
EnsemblPlantsGene:GLYMA_03G128200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:K7KEP5	EnsemblPlants:KRH66777
ProteinID:KRH66777	ProteinID:KRH66777.1	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF206	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000294AC99	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:34259243..34263679

Molecular Weight (calculated)

32367.8 Da

IEP (calculated)

8.843

GRAVY (calculated)

-0.336

Length

290 amino acids

Sequence
(BLAST)

001: MGSAETLKGR VQHTLRRLAQ NREAARKSRL RKMAYVQQLE SSRLKLISPA GLGIFISSTG DQAQSMNGNG AMAFDVEYAR WLEEHNRQTN ELRTAINSHA
101: GDIELRTIVD NFVTQFNDIF RLKAIAAKAD SCQILSGMWK TPAERCFMWI GGFRPSELFK LLLSQLEPLV EQQMDIYSFQ QSCQQAEEAL SQGMDALQQS
201: VSETLANGSP SSSGSPGNVA NNMGQITMAM GKLGTLEGFL LQADNLRQRT LEVMLQILTT RQSARALLAI SDYFSRLREL GSLWPSRPRE

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.