Factsheet for Os01t0279900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0194300-01
Os01t0279900-01
Os01t0808100-01
Os01t0948900-01
Os02t0512400-01
Os03t0318600-01
Os04t0393500-01
Os05t0492000-00
Os07t0687700-01
Os11t0141900-00
Os12t0138500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	Os01t0194300-01	AT1G64280.1	10659709
AT5G06960.1	Os01t0194300-01	AT1G64280.1	10662863
AT5G06960.1	Os01t0194300-01	AT1G64280.1	12383081
AT5G06960.1	Os01t0194300-01	AT1G64280.1	15634206
AT5G06960.1	Os01t0948900-01	AT2G41370.1	21798944
AT5G06960.1	Os11t0141900-00	AT2G41370.1	21798944
AT5G06960.1	Os12t0138500-01	AT2G41370.1	21798944
AT5G06960.1	Os02t0512400-01	AT3G02000.1	19218396
AT5G06960.1	Os04t0393500-01	AT3G02000.1	19218396
AT5G06960.1	Os01t0279900-01	AT5G06960.1	17098811
AT5G06960.1	Os01t0808100-01	AT5G06960.1	17098811
AT5G06960.1	Os03t0318600-01	AT5G06960.1	17098811
AT5G06960.1	Os05t0492000-00	AT5G06960.1	17098811
AT5G06960.1	Os07t0687700-01	AT5G06960.1	17098811
AT5G06960.1	Os01t0279900-01	AT5G06960.1	21798944
AT5G06960.1	Os01t0808100-01	AT5G06960.1	21798944
AT5G06960.1	Os03t0318600-01	AT5G06960.1	21798944
AT5G06960.1	Os05t0492000-00	AT5G06960.1	21798944
AT5G06960.1	Os07t0687700-01	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02530	Sorghum	nucleus	92.71	92.42
TraesCS3A01G190700.2	Wheat	nucleus	92.71	91.87
TraesCS3B01G220400.2	Wheat	nucleus	92.71	91.87
HORVU3Hr1G042790.4	Barley	nucleus	92.4	91.84
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	41.34	91.28
TraesCS3D01G194800.2	Wheat	nucleus	92.1	91.27
PGSC0003DMT400024428	Potato	nucleus	82.07	83.33
Solyc11g064950.1.1	Tomato	nucleus	82.07	83.33
KRH36324	Soybean	nucleus	82.98	82.23
Os07t0687700-01	Rice	nucleus	81.46	80.24
CDY08443	Canola	nucleus	80.55	80.06
Os03t0318600-01	Rice	nucleus	80.85	79.88
Bra034767.1-P	Field mustard	nucleus	80.24	79.76
AT5G06950.5	Thale cress	nucleus	79.33	79.09
Bra009241.1-P	Field mustard	nucleus	73.86	78.39
CDY00762	Canola	nucleus	78.72	78.25
CDX73830	Canola	nucleus	78.72	78.25
Bra001443.1-P	Field mustard	nucleus	78.72	78.25
Solyc01g008730.2.1	Tomato	nucleus	77.51	77.98
CDX70053	Canola	nucleus	76.9	77.37
CDY50562	Canola	nucleus	78.42	77.25
Bra038705.1-P	Field mustard	nucleus	78.42	77.25
CDY52616	Canola	nucleus	78.12	77.18
CDX98971	Canola	nucleus	76.9	77.13
AT5G06960.1	Thale cress	nucleus	75.68	75.45
PGSC0003DMT400026710	Potato	mitochondrion	40.12	75.0
CDY05010	Canola	nucleus	73.25	73.93
AT3G12250.4	Thale cress	nucleus	79.64	73.8
Bra028713.1-P	Field mustard	nucleus	72.95	73.62
CDY14061	Canola	nucleus	72.95	73.62
Zm00001d008225_P001	Maize	nucleus	92.1	72.14
CDY42138	Canola	nucleus	69.3	70.37
KRH66777	Soybean	nucleus	62.01	70.34
Os05t0492000-00	Rice	nucleus	67.48	67.27
PGSC0003DMT400060922	Potato	nucleus	51.67	63.43
Solyc10g080780.1.1	Tomato	cytosol	51.37	62.83
KRG93068	Soybean	nucleus	82.67	61.26
VIT_08s0007g05170.t01	Wine grape	nucleus	83.89	61.2
Os10t0566200-00	Rice	extracellular	21.88	61.02
VIT_13s0084g00660.t01	Wine grape	nucleus	85.71	60.13
PGSC0003DMT400060926	Potato	nucleus	78.42	59.58
Os06t0265400-01	Rice	nucleus	68.09	58.18
KRH20680	Soybean	nucleus	82.07	57.57
Solyc10g080770.1.1	Tomato	nucleus	78.42	57.33
KRG95103	Soybean	nucleus	79.33	56.86
KRH66771	Soybean	nucleus	79.33	56.74
KRH13334	Soybean	nucleus	81.46	53.92
Os01t0882200-00	Rice	cytosol, extracellular	21.88	50.7
Os01t0808100-01	Rice	nucleus	51.67	46.7
Os04t0637000-01	Rice	nucleus	49.85	41.31
Os11t0152700-01	Rice	nucleus	56.23	38.22
Os12t0152900-01	Rice	nucleus	55.32	37.22
Os05t0443900-01	Rice	nucleus	53.19	36.16
Os08t0176900-01	Rice	nucleus	40.12	33.93
Os02t0194900-00	Rice	nucleus	38.3	33.78
Os09t0280500-01	Rice	nucleus	47.72	33.62
Os06t0614100-01	Rice	nucleus	45.9	33.48
Os01t0859500-01	Rice	nucleus	54.41	33.21
Os09t0489500-02	Rice	nucleus	51.98	32.7
Os01t0859600-01	Rice	cytosol	18.84	14.87

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EntrezGene:4326907	EMBL:AB051296
EMBL:AK242743	EMBL:AP000815	ProteinID:BAF04665.1	ProteinID:BAS71588.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EMBL:HM991168	InterPro:IPR004827	InterPro:IPR025422	EnsemblPlantsGene:Os01g0279900	EnsemblPlants:Os01t0279900-01
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF244	UniProt:Q0JNL3	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI00000A52E0
RefSeq:XP_015621703.1	RefSeq:XP_015621704.1	InterPro:bZIP	SEG:seg	:	:

Description

b-ZIP TRANSCRIPTION FACTOR 3Similar to Transcription factor TGA6 (AtbZIP45). Splice isoform 2. (Os01t0279900-01)

Coordinates

chr1:+:9928971..9935981

Molecular Weight (calculated)

36839.6 Da

IEP (calculated)

7.798

GRAVY (calculated)

-0.638

Length

329 amino acids

Sequence
(BLAST)

001: MADMSPRTDT STDDTDDNHM LEPGQLALAA ASDSDRSKDK HEDQKTLRRL AQNREAARKS RLRKKAYVQQ LENSRLKLTQ LEQELQRARQ QGIFISSSVD
101: QTHSMSGNGA LAFDMEYARW LEEHNRQINE LRSAVNAHAG DNELRGVVDK IMSHYEEIFK QKGNAAKADV FHVLSGMWKT PAERCFLWLG GFRPSELLKL
201: LSTQLEPLTE QQLSGIANLQ QSSQQAEDAL SQGMEALQQS LAETLAGSLG SSGSTGNVAN YMGQMAMAMG KLGTLENFLR QADNLRQQTL QQMQRILTTR
301: QSARALLVIS DYSSRLRALS SLWLARPKE

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.