Factsheet for Os01t0859600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0279900-01	Rice	nucleus	14.87	18.84
Os03t0318600-01	Rice	nucleus	13.91	17.42
KRH21813	Soybean	nucleus	6.71	17.39
KRH39187	Soybean	cytosol, extracellular, nucleus	6.95	16.29
Os07t0687700-01	Rice	nucleus	12.71	15.87
Os05t0492000-00	Rice	nucleus	12.23	15.45
Os04t0637000-01	Rice	nucleus	14.39	15.11
Os06t0265400-01	Rice	nucleus	13.91	15.06
HORVU2Hr1G116130.4	Barley	nucleus	4.8	15.04
Os01t0882200-00	Rice	cytosol, extracellular	4.8	14.08
Os01t0808100-01	Rice	nucleus	11.75	13.46
Os11t0152700-01	Rice	nucleus	15.59	13.43
Os10t0566200-00	Rice	extracellular	3.6	12.71
Os05t0443900-01	Rice	nucleus	14.63	12.6
Os02t0194900-00	Rice	nucleus	11.03	12.33
Os01t0859500-01	Rice	nucleus	15.35	11.87
Os12t0152900-01	Rice	nucleus	13.91	11.86
Os08t0176900-01	Rice	nucleus	11.03	11.83
Os09t0280500-01	Rice	nucleus	11.51	10.28
Os09t0489500-02	Rice	nucleus	12.71	10.13
Os06t0614100-01	Rice	nucleus	10.79	9.98
Zm00001d045823_P001	Maize	cytosol	6.95	9.6

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EntrezGene:4325064	EMBL:AK072151	ProteinID:BAB90562.1
ProteinID:BAB91755.1	ProteinID:BAF06783.1	ProteinID:BAS75329.1	ProteinID:EAZ14220.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
EnsemblPlantsGene:Os01g0859600	EnsemblPlants:Os01t0859600-01	PFAM:PF12937	PANTHER:PTHR44994	PANTHER:PTHR44994:SF2	UniProt:Q8RZ32
SMART:SM00256	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00000A5BA4	RefSeq:XP_015621491.1	RefSeq:XP_015621492.1
RefSeq:XP_015621493.1	SEG:seg	:	:	:	:

Description

F-box protein 49Cyclin-like F-box domain containing protein. (Os01t0859600-01)

Coordinates

chr1:-:37190435..37197744

Molecular Weight (calculated)

47274.3 Da

IEP (calculated)

6.050

GRAVY (calculated)

0.068

Length

417 amino acids

Sequence
(BLAST)

001: MEHLPVEVIG NILAHLSAAR DVMVASGVCR KWRTACRKHL HSLSFNSDDF PRDMTTRQLE IVITQTIFQT MGLQCLSIHI DRTHEFSAAP VIAWLMYTRE
101: TLRSLSYNVR TNPNVNILEK CGRQKLEVLD LDHNTITGVE PSYQRFTCLK SLSLRHVSIS ALDLSLLVAA CPKIESLALD FLEVVTSDPQ STMELTSHTL
201: KSLFAKSVGV DKIILDTDNL EVLNLNALNL DLFELIGKGT LKHLKIDDVS VTHMDIGEST DHLEVVDVSN FTIVRPKLYS MISRASNLRM LRFWGVVFDD
301: EDEIVDSETI AVSFPLLRHL SLSYELRDGL LHYSLQGSSP LDNVSVLELG WTVISEHFGP WVFGMIERCP NLKKLVIHGV LSEAKTREER QMLASFTSFI
401: VCLMRKYVHV DVQFEYE

Best Arabidopsis Sequence Match ( AT1G67190.2 )
(BLAST)

001: MDYLPVEVIG NILSRLGGAR DVVIASATCR KWREACRKHL QTLSFNSADW PFYRDLTTNR LEILITQTIF QTMGLQGLSI MMDDANKFSA ATVIAWLMYT
101: RDTLRRLSYN VRTTPNVNIL EICGRQKLEA LVLAHNSITG VEPSFQRFPC LKSLSLSYVS ISALDLNLLL SACPMIESLE LVSLEIAMSD AQVTIELSSP
201: TLKSVYFDGI SLDKFILEAD SIEFLHMKDC VLELFELIGN GTLKHFKLDD VSVIHLDIME TSESLEVVDV NHFTMVWPKF YQMISRSQKL KKLRLWDVVF
301: DDDDEIIDVE SIAAGFSHLT HLSLSYDLKD GAAHYSLQGT TQLENVTVLE LGWTVINDVF SIWVEELLRR CPNLKKLIIY GVVSETKTQG DCQILATFTW
401: SIVQLMRKYI HVEVQFEYE

Arabidopsis Description

F-box/LRR-repeat protein At1g67190 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.