Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0512400-01 | |
| Os04t0393500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68640.1 | Os02t0512400-01 | AT3G02000.1 | 19218396 |
| AT1G68640.1 | Os04t0393500-01 | AT3G02000.1 | 19218396 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0882200-00 | Rice | cytosol, extracellular | 87.29 | 72.54 |
| Os06t0265400-01 | Rice | nucleus | 79.66 | 24.42 |
| Os01t0279900-01 | Rice | nucleus | 61.02 | 21.88 |
| HORVU7Hr1G042180.5 | Barley | nucleus | 69.49 | 21.75 |
| Os03t0318600-01 | Rice | nucleus | 61.02 | 21.62 |
| Os07t0687700-01 | Rice | nucleus | 61.02 | 21.56 |
| TraesCS7A01G207100.1 | Wheat | nucleus | 72.03 | 19.19 |
| TraesCS7D01G209800.1 | Wheat | nucleus | 72.03 | 18.97 |
| GSMUA_Achr9P15550_001 | Banana | nucleus | 68.64 | 18.88 |
| TraesCS7B01G114300.1 | Wheat | nucleus | 71.19 | 18.75 |
| Zm00001d037317_P003 | Maize | nucleus | 67.8 | 18.52 |
| Zm00001d037316_P008 | Maize | cytosol, nucleus, peroxisome, plastid | 50.85 | 17.7 |
| VIT_01s0011g03230.t01 | Wine grape | nucleus | 66.1 | 17.22 |
| OQU76203 | Sorghum | nucleus | 66.95 | 17.1 |
| Bra004329.1-P | Field mustard | nucleus | 63.56 | 17.01 |
| CDX95999 | Canola | nucleus | 63.56 | 16.97 |
| CDY38608 | Canola | nucleus | 63.56 | 16.97 |
| AT1G68640.1 | Thale cress | nucleus | 63.56 | 16.59 |
| KRG90784 | Soybean | nucleus | 63.56 | 16.48 |
| KRH35977 | Soybean | nucleus | 62.71 | 16.23 |
| Solyc05g009660.2.1 | Tomato | nucleus | 66.1 | 16.12 |
| PGSC0003DMT400033741 | Potato | nucleus | 64.41 | 15.73 |
| KRH70569 | Soybean | nucleus | 60.17 | 15.2 |
| Os05t0492000-00 | Rice | nucleus | 42.37 | 15.15 |
| KRH75411 | Soybean | nucleus | 60.17 | 14.61 |
| Os04t0637000-01 | Rice | nucleus | 40.68 | 12.09 |
| Os11t0152700-01 | Rice | nucleus | 48.31 | 11.78 |
| Os08t0176900-01 | Rice | nucleus | 38.14 | 11.57 |
| Os12t0152900-01 | Rice | nucleus | 44.92 | 10.84 |
| Os02t0194900-00 | Rice | nucleus | 33.9 | 10.72 |
| Os05t0443900-01 | Rice | nucleus | 43.22 | 10.54 |
| Os09t0489500-02 | Rice | nucleus | 46.61 | 10.52 |
| Os06t0614100-01 | Rice | nucleus | 38.98 | 10.2 |
| Os01t0859500-01 | Rice | nucleus | 45.76 | 10.02 |
| Os09t0280500-01 | Rice | nucleus | 38.98 | 9.85 |
| Os01t0808100-01 | Rice | nucleus | 16.95 | 5.49 |
| Os01t0859600-01 | Rice | cytosol | 12.71 | 3.6 |
Protein Annotations
| MapMan:15.5.4.7.1 | UniProt:A0A0P0XXC4 | ProteinID:BAT12112.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR025422 | EnsemblPlantsGene:Os10g0566200 | EnsemblPlants:Os10t0566200-00 | PFscan:PS51806 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF371 | SignalP:SignalP-noTM | InterPro:TGA_domain | UniParc:UPI000393C4B7 | SEG:seg |
Description
Similar to predicted protein. (Os10t0566200-00)
Coordinates
chr10:+:22424314..22425029
Molecular Weight (calculated)
12944.9 Da
IEP (calculated)
4.662
GRAVY (calculated)
0.273
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSRILWMSH AERFFMWLGG FCCSELLKVL ESHLEPLTNQ QLMGICNLQQ SSQQAEDALS QGMEALQQTL GDTLASAAAT VVVGGVGADN VTNYMGQMAI
101: AMAMLTTLEN FLKLRLIC
101: AMAMLTTLEN FLKLRLIC
001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD
Arabidopsis Description
PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.