Factsheet for PGSC0003DMT400033741

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006076
PGSC0003DMT400013427
PGSC0003DMT400013430
PGSC0003DMT400013435

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68640.1	PGSC0003DMT400006076	AT3G02000.1	19218396
AT1G68640.1	PGSC0003DMT400013427	AT3G02000.1	19218396
AT1G68640.1	PGSC0003DMT400013430	AT3G02000.1	19218396
AT1G68640.1	PGSC0003DMT400013435	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009660.2.1	Tomato	nucleus	95.86	95.66
VIT_01s0011g03230.t01	Wine grape	nucleus	71.43	76.16
PGSC0003DMT400024428	Potato	nucleus	48.24	71.91
KRH35977	Soybean	nucleus	62.11	65.79
KRG90784	Soybean	nucleus	61.49	65.27
KRH70569	Soybean	nucleus	62.32	64.45
Os10t0566200-00	Rice	extracellular	15.73	64.41
GSMUA_Achr9P15550_001	Banana	nucleus	57.14	64.34
PGSC0003DMT400026710	Potato	mitochondrion	23.4	64.2
Os06t0265400-01	Rice	nucleus	50.52	63.38
KRH75411	Soybean	nucleus	62.32	61.93
CDY38608	Canola	nucleus	56.31	61.54
Bra004329.1-P	Field mustard	nucleus	56.11	61.45
CDX95999	Canola	nucleus	56.11	61.31
AT1G68640.1	Thale cress	nucleus	57.35	61.28
HORVU7Hr1G042180.5	Barley	nucleus	47.41	60.74
PGSC0003DMT400060926	Potato	nucleus	53.21	59.35
PGSC0003DMT400060922	Potato	nucleus	32.51	58.58
TraesCS7D01G209800.1	Wheat	nucleus	51.14	55.13
TraesCS7A01G207100.1	Wheat	nucleus	50.52	55.08
Os01t0882200-00	Rice	cytosol, extracellular	16.15	54.93
TraesCS7B01G114300.1	Wheat	nucleus	50.93	54.91
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	38.3	54.57
Zm00001d037317_P003	Maize	nucleus	48.03	53.7
OQU76203	Sorghum	nucleus	48.24	50.43
PGSC0003DMT400029743	Potato	nucleus, plastid	36.44	46.32
PGSC0003DMT400067782	Potato	nucleus	31.47	46.2
PGSC0003DMT400043651	Potato	nucleus	34.37	45.98
PGSC0003DMT400070884	Potato	nucleus	34.16	45.71
PGSC0003DMT400033308	Potato	nucleus	33.33	45.22
PGSC0003DMT400016235	Potato	nucleus	34.37	42.35
PGSC0003DMT400018306	Potato	nucleus	41.2	40.78
PGSC0003DMT400060865	Potato	nucleus	38.72	40.56

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102589177	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	ncoils:Coil
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791
GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422
UniProt:M1AZL1	PFAM:PF00170	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG400012962	PGSC:PGSC0003DMG400012962	EnsemblPlants:PGSC0003DMT400033741
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF372	SMART:SM00338
SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0002960D9F	RefSeq:XP_006362551.2	InterPro:bZIP	SEG:seg

Description

Transcription factor HBP-1b(C1) [Source:PGSC_GENE;Acc:PGSC0003DMG400012962]

Coordinates

chr5:+:2168066..2173732

Molecular Weight (calculated)

53104.8 Da

IEP (calculated)

7.003

GRAVY (calculated)

-0.453

Length

483 amino acids

Sequence
(BLAST)

001: MQAFKAAAVT LNNNNSNSNS NSNMYCHSSY YLRGDEGSRL AARFADIGEL EQSTGFTQQD AVDLSRTSVY GEMRPNNIGV VSCNNNNLHF GELNTSIGSS
101: ETGVETGKFM LQKAQTGMVG GGGVVGGGGG GMALGNVQHF ENWGDSGIAD HSQQTDTSTD VDTDERNHQG QGVQHGTLIA VDSMDLSKVK LGDQKTLRRL
201: AQNREAARKS RLRKKAYVQQ LENSRLKLSQ LEQELKRARQ QGIFIANGYA GDQSISAGGN GALAFDMDYA RWLDEHQRLI SDLRSAVNSH RGDNELRHLV
301: DGVMSHYDEK FKLKSVGLKA DVFHMLSGMW KTPVERCFMW LGGFRSSELL KILGNHLEPF TEQQLIGICN LQQSSQQAED ALSQGMEALQ QLLVDTLSST
401: SLGPTGSGNV ADYMGQMAIA MGQLATLESF LYQADLLRQR TLQQLHRILT TRQAARALLV ISDYMSRLRA LSSLWLARPK DQL

Best Arabidopsis Sequence Match ( AT1G68640.1 )
(BLAST)

001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD

Arabidopsis Description

PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.