Factsheet for VIT_01s0011g03230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0146g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68640.1	VIT_01s0146g00220.t01	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009660.2.1	Tomato	nucleus	76.38	71.49
PGSC0003DMT400033741	Potato	nucleus	76.16	71.43
KRH35977	Soybean	nucleus	71.74	71.27
KRG90784	Soybean	nucleus	69.98	69.67
KRH70569	Soybean	nucleus	68.87	66.81
Os06t0265400-01	Rice	nucleus	56.73	66.75
GSMUA_Achr9P15550_001	Banana	nucleus	62.91	66.43
Os10t0566200-00	Rice	extracellular	17.22	66.1
VIT_08s0007g05170.t01	Wine grape	nucleus	64.68	64.97
CDY38608	Canola	nucleus	62.69	64.25
Bra004329.1-P	Field mustard	nucleus	62.47	64.17
CDX95999	Canola	nucleus	62.47	64.03
KRH75411	Soybean	nucleus	68.43	63.79
HORVU7Hr1G042180.5	Barley	nucleus	52.98	63.66
AT1G68640.1	Thale cress	nucleus	63.13	63.27
VIT_13s0084g00660.t01	Wine grape	nucleus	65.34	63.11
TraesCS7A01G207100.1	Wheat	nucleus	58.06	59.37
TraesCS7D01G209800.1	Wheat	nucleus	58.5	59.15
TraesCS7B01G114300.1	Wheat	nucleus	58.28	58.93
Os01t0882200-00	Rice	cytosol, extracellular	17.88	57.04
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	41.06	54.87
Zm00001d037317_P003	Maize	nucleus	52.1	54.63
VIT_07s0031g01320.t01	Wine grape	nucleus	41.94	54.44
VIT_18s0001g04470.t01	Wine grape	nucleus	42.16	52.62
OQU76203	Sorghum	nucleus	52.54	51.52
VIT_08s0007g06160.t01	Wine grape	nucleus	46.36	42.77
VIT_06s0080g00360.t01	Wine grape	nucleus	44.81	40.6

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100249239	wikigene:100249239	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2
ProteinID:CBI27049	ProteinID:CBI27049.3	ncoils:Coil	UniProt:D7T978	EMBL:FN595752	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908
GO:GO:0009909	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	EntrezGene:LOC100249239
wikigene:LOC100249239	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF372	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0001BE2AE7
ArrayExpress:VIT_01s0011g03230	EnsemblPlantsGene:VIT_01s0011g03230	EnsemblPlants:VIT_01s0011g03230.t01	RefSeq:XP_002282030	RefSeq:XP_002282030.2	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:2941266..2946275

Molecular Weight (calculated)

49612.5 Da

IEP (calculated)

6.055

GRAVY (calculated)

-0.436

Length

453 amino acids

Sequence
(BLAST)

001: MQSFKAAPTA SDIGDESSRN QTRFPDLGEL EQSAAFHHDD AVDLSSSAMF RLKSGNVGVV SPLHFGGLNT NIGPSDMVST SGTGVVDTGQ LMFSKGTAET
101: ATATVASLGN GHFENWGESG MGDNSQQTDT STDVDTDDKN QYHGVQHGAL VAVDSMDQSK GKTGDQKTLR RLAQNREAAR KSRLRKKAYV QQLECSQLKL
201: TQLEQELQRA RQQGVFIATG FSGDQSHSMG GNGALAFDMD YARWLDEHQR LINDLRSAVN SHVGDNELRI LVDGVMAHYD EIFRLKSMGA KSDVFHMLSG
301: MWKTPAERCF MWLGGFRSSE LLKILGNQLE PLTDQQLMGI CNLQQSSQQA EDALSQGMEA LQQSLVETLS SNSLGPAGSG NVADYMGQMA IAMGKLATLE
401: NFLHQADLLR QQTLQQMHRI LTTRQAARAL LVISDYMSRL RALSSLWLAR PRD

Best Arabidopsis Sequence Match ( AT1G68640.1 )
(BLAST)

001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD

Arabidopsis Description

PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.