CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94592
KRH01571
KRH06898
KRH70543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68640.1	KRG94592	AT3G02000.1	19218396
AT1G68640.1	KRH01571	AT3G02000.1	19218396
AT1G68640.1	KRH06898	AT3G02000.1	19218396
AT1G68640.1	KRH70543	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70569	Soybean	nucleus	86.63	90.15
KRH35977	Soybean	nucleus	64.4	68.64
VIT_01s0011g03230.t01	Wine grape	nucleus	63.79	68.43
KRG90784	Soybean	nucleus	63.79	68.13
KRH36324	Soybean	nucleus	46.09	67.47
PGSC0003DMT400033741	Potato	nucleus	61.93	62.32
Os06t0265400-01	Rice	nucleus	48.56	61.3
Solyc05g009660.2.1	Tomato	nucleus	60.91	61.16
Os10t0566200-00	Rice	extracellular	14.61	60.17
AT1G68640.1	Thale cress	nucleus	55.14	59.29
CDY38608	Canola	nucleus	53.09	58.37
Bra004329.1-P	Field mustard	nucleus	52.88	58.28
CDX95999	Canola	nucleus	52.88	58.14
GSMUA_Achr9P15550_001	Banana	nucleus	51.23	58.04
KRH66777	Soybean	nucleus	34.36	57.59
HORVU7Hr1G042180.5	Barley	nucleus	43.62	56.23
KRG93068	Soybean	nucleus	50.41	55.18
KRH63045	Soybean	cytosol	10.49	54.26
KRG95103	Soybean	nucleus	51.23	54.25
KRH20680	Soybean	nucleus	51.85	53.73
TraesCS7A01G207100.1	Wheat	nucleus	48.77	53.5
KRH66771	Soybean	nucleus	50.62	53.48
TraesCS7D01G209800.1	Wheat	nucleus	48.97	53.12
TraesCS7B01G114300.1	Wheat	nucleus	48.97	53.12
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	35.19	50.44
Os01t0882200-00	Rice	cytosol, extracellular	14.61	50.0
Zm00001d037317_P003	Maize	nucleus	44.24	49.77
KRG97639	Soybean	nucleus	36.83	49.45
KRH13334	Soybean	nucleus	50.21	49.09
KRH31239	Soybean	nucleus	36.42	48.63
KRH53141	Soybean	nucleus	34.57	47.32
OQU76203	Sorghum	nucleus	44.86	47.19
KRH59415	Soybean	nucleus	33.95	44.59
KRH64780	Soybean	nucleus	33.13	44.48
KRH43266	Soybean	nucleus	34.16	43.8
KRH18838	Soybean	nucleus	33.33	43.78
KRH21813	Soybean	nucleus	14.4	43.48
KRH16629	Soybean	nucleus	32.92	43.24
KRH67029	Soybean	nucleus	40.95	40.53
KRG95350	Soybean	nucleus	40.33	39.92
KRH39187	Soybean	cytosol, extracellular, nucleus	14.61	39.89
KRH71904	Soybean	nucleus	39.3	39.46
KRG92164	Soybean	nucleus	18.31	37.87
KRH26635	Soybean	nucleus	37.86	37.7
KRH22685	Soybean	nucleus	37.65	37.35
KRH34622	Soybean	cytosol	17.7	37.23
KRH32997	Soybean	nucleus	38.89	36.56
KRH30432	Soybean	nucleus	36.83	36.31
KRH25227	Soybean	nucleus	37.04	35.93

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100777181	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	UniProt:A0A0R0LE00
EMBL:ACUP02000349	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G084200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422
EnsemblPlants:KRH75411	ProteinID:KRH75411	ProteinID:KRH75411.1	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF372	SMART:SM00338	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI0006ED83F5	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:24682089..24688981

Molecular Weight (calculated)

54312.5 Da

IEP (calculated)

7.800

GRAVY (calculated)

-0.470

Length

486 amino acids

Sequence
(BLAST)

001: MPFSSQRHSR IFLPSHTSLF LFSLMKNMQG FKTAQPSSQQ LYCHSSFLLR GNDPNQNPAR FSDLGEHHHF SAVFHQEDAA DLSSSSMFSV KSSNVVGGSN
101: MQYGTLNTNV GHAEIGSSGG GCMDTRQQLM YHKGVTMAAL PLGNGQVENW ADSGKADNSQ QTDDTSTDID TDDIIPCNRV KNGTRMVVHS KDETKVKPGD
201: QKTLRRLAQN REAARKSRLR KKAYVQQLES SRVKLVQLEQ ELQRARQQGI FIATPGDQGH LAVGNGALAF DIDYAHWVDE HQRLLNDLRT AVNSQMSDSD
301: LHILVDSVMA HYNELFRLKS LGTKADVLHI HNGMWKTPVE RCFMWLGGFR SSELLKIIKN HLEPLTDQQL MGIYNLQQSS QQAEDALSQG LEALQQSLVE
401: TLSSISLGPT DSGNVVDYMG QMALAMGKLA DLESFVRQAD LLKQQTLQQL QRILTTRQTA RALLVQTDYI SRLRALSSLW LARPRE

Best Arabidopsis Sequence Match ( AT1G68640.1 )
(BLAST)

001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD

Arabidopsis Description

PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.