CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94592
KRH01571
KRH06898
KRH37416
KRH70543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	KRH37416	AT1G64280.1	10659709
AT1G22070.1	KRH37416	AT1G64280.1	10662863
AT1G22070.1	KRH37416	AT1G64280.1	15634206
AT1G22070.1	KRH37416	AT1G64280.1	21798944
AT1G22070.1	KRG94592	AT3G02000.1	19218396
AT1G22070.1	KRH01571	AT3G02000.1	19218396
AT1G22070.1	KRH06898	AT3G02000.1	19218396
AT1G22070.1	KRH70543	AT3G02000.1	19218396
AT1G77920.1	KRH37416	AT1G64280.1	10662863
AT1G77920.1	KRH37416	AT1G64280.1	15634206
AT1G77920.1	KRG94592	AT3G02000.1	19218396
AT1G77920.1	KRH01571	AT3G02000.1	19218396
AT1G77920.1	KRH06898	AT3G02000.1	19218396
AT1G77920.1	KRH70543	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63045	Soybean	cytosol	24.31	93.62
KRH53141	Soybean	nucleus	88.4	90.14
KRH18838	Soybean	nucleus	70.44	68.92
KRH16629	Soybean	nucleus	70.17	68.65
VIT_18s0001g04470.t01	Wine grape	nucleus	56.08	55.92
Solyc12g056860.1.1	Tomato	nucleus	53.04	55.17
Bra015646.1-P	Field mustard	nucleus	51.66	55.16
Solyc04g072460.2.1	Tomato	nucleus	54.42	54.57
PGSC0003DMT400070884	Potato	nucleus	54.14	54.29
CDX68037	Canola	nucleus	54.97	53.64
GSMUA_AchrUn_...	Banana	nucleus	51.93	53.11
PGSC0003DMT400043651	Potato	nucleus	52.49	52.63
CDY38843	Canola	nucleus	53.31	52.16
GSMUA_Achr5P16630_001	Banana	nucleus	52.49	52.05
KRG97639	Soybean	nucleus	51.93	51.93
AT1G77920.1	Thale cress	nucleus	52.76	51.9
Bra016389.1-P	Field mustard	nucleus	52.76	51.9
Bra031364.1-P	Field mustard	nucleus	54.14	51.85
CDY41495	Canola	nucleus	52.49	51.49
KRH31239	Soybean	nucleus	51.66	51.37
GSMUA_Achr10P...	Banana	nucleus	49.17	50.71
AT1G22070.1	Thale cress	nucleus	53.59	50.52
CDY38253	Canola	nucleus	53.59	50.39
KRH36324	Soybean	nucleus	45.03	49.1
KRH59415	Soybean	nucleus	49.45	48.38
KRH43266	Soybean	nucleus	48.9	46.7
CDY21336	Canola	nucleus	53.87	46.65
KRH66777	Soybean	nucleus	37.29	46.55
Zm00001d016312_P001	Maize	cytosol	11.88	46.24
CDX88399	Canola	nucleus	53.59	45.12
CDX87494	Canola	nucleus	53.87	43.92
Os04t0637000-01	Rice	nucleus	47.24	43.07
KXG27222	Sorghum	nucleus	48.07	42.65
KXG38496	Sorghum	nucleus	35.36	41.16
Zm00001d026398_P006	Maize	nucleus	46.13	40.53
TraesCS2A01G526300.1	Wheat	nucleus	46.69	40.33
TraesCS2D01G529000.1	Wheat	nucleus	46.96	40.0
TraesCS2B01G556600.1	Wheat	nucleus	46.96	39.08
KRG92164	Soybean	nucleus	25.14	38.72
Zm00001d024160_P003	Maize	nucleus	44.75	38.21
KRG93068	Soybean	nucleus	45.86	37.39
KRH34622	Soybean	cytosol	23.48	36.8
Zm00001d002143_P002	Maize	cytosol	44.2	36.45
KRG95103	Soybean	nucleus	44.75	35.29
KRH20680	Soybean	nucleus	45.3	34.97
KRH66771	Soybean	nucleus	44.2	34.78
KRH21813	Soybean	nucleus	14.92	33.54
KRH75411	Soybean	nucleus	44.48	33.13
KRH70569	Soybean	nucleus	42.54	32.98
KRH35977	Soybean	nucleus	41.44	32.89
KRH13334	Soybean	nucleus	45.03	32.8
OQU79985	Sorghum	golgi, vacuole	46.69	32.75
KRG90784	Soybean	nucleus	41.16	32.75
Os08t0176900-01	Rice	nucleus	35.08	32.65
Zm00001d041428_P001	Maize	cytosol	13.81	32.05
KRH67029	Soybean	nucleus	43.09	31.77
KRG95350	Soybean	nucleus	42.82	31.57
KRH22685	Soybean	nucleus	42.54	31.43
KRH71904	Soybean	nucleus	41.71	31.2
KRH26635	Soybean	nucleus	41.99	31.15
CDX79240	Canola	nucleus	48.9	31.05
KRH30432	Soybean	nucleus	41.71	30.63
KRH25227	Soybean	nucleus	42.27	30.54
KRH39187	Soybean	cytosol, extracellular, nucleus	14.64	29.78
KRH32997	Soybean	nucleus	41.16	28.82
HORVU2Hr1G116090.2	Barley	cytosol	30.11	25.77

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100794268	MapMan:15.5.4.1	MapMan:15.5.4.7.1	UniProt:A0A0R0KCM8	EMBL:ACUP02002775
ncoils:Coil	EnsemblPlantsGene:GLYMA_04G254800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	EnsemblPlants:KRH64780
ProteinID:KRH64780	ProteinID:KRH64780.1	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF180	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0006ED62D1
InterPro:bZIP	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:52132306..52136085

Molecular Weight (calculated)

40931.5 Da

IEP (calculated)

8.914

GRAVY (calculated)

-0.338

Length

362 amino acids

Sequence
(BLAST)

001: MKMDIYEPFQ QVSMWGGNFK VDGGLNSIAS PMLMVGTNVE NKSEYIPREP REPSGSGADQ ETTNKDVNKM LRRLAQNREA ARKSRLRKKA YVKQLESSRL
101: KLMQLELEIG KARKQYIPKY LIQGLYMGTA LDAGYIGSTS ETINPGIVAF EIEYGQWVEE QERRNEELRH AFQTQAPGVQ LNVVVQSVLN HYSNLFRMKA
201: EAVKADVLYL LSGAWKPSVE RIFLWIGGSR PSQLLNIIVP QLEPLTDQQI VSINNLRLSS QQAEDALSQG LEKLQQSLVH DMAVDPLSVG NLGLQMARTM
301: EKFEALEGFV NQADHLRQQT LLHMSRILSI HQAARGLLAL GEYFHRLRTL CSLWSARSCE LA

Best Arabidopsis Sequence Match ( AT1G22070.1 )
(BLAST)

001: MEMMSSSSST TQVVSFRDMG MYEPFQQLSG WESPFKSDIN NITSNQNNNQ SSSTTLEVDA RPEADDNNRV NYTSVYNNSL EAEPSSNNDQ DEDRINDKMK
101: RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE
201: LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE
301: SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT

Arabidopsis Description

TGA3At1g22070 [Source:UniProtKB/TrEMBL;Acc:Q147Q9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.