CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74327
CDX91918
CDY25575
CDY34413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	CDY25575	AT1G64280.1	10659709
AT1G22070.1	CDY34413	AT1G64280.1	10659709
AT1G22070.1	CDY25575	AT1G64280.1	10662863
AT1G22070.1	CDY34413	AT1G64280.1	10662863
AT1G22070.1	CDY25575	AT1G64280.1	15634206
AT1G22070.1	CDY34413	AT1G64280.1	15634206
AT1G22070.1	CDY25575	AT1G64280.1	21798944
AT1G22070.1	CDY34413	AT1G64280.1	21798944
AT1G22070.1	CDX74327	AT3G02000.1	19218396
AT1G22070.1	CDX91918	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41495	Canola	nucleus	96.22	96.48
Bra016389.1-P	Field mustard	nucleus	95.14	95.65
CDY38253	Canola	nucleus	87.84	84.42
AT1G22070.1	Thale cress	nucleus	85.95	82.81
CDY21336	Canola	nucleus	88.11	77.99
CDX68037	Canola	nucleus	70.27	70.08
VIT_18s0001g04470.t01	Wine grape	nucleus	62.7	63.91
CDX88399	Canola	nucleus	71.62	61.63
CDX87494	Canola	nucleus	71.35	59.46
Solyc04g072460.2.1	Tomato	nucleus	57.3	58.73
PGSC0003DMT400070884	Potato	nucleus	57.03	58.45
Solyc12g056860.1.1	Tomato	nucleus	54.86	58.33
PGSC0003DMT400043651	Potato	nucleus	56.49	57.89
CDY08810	Canola	nucleus	57.03	57.49
CDY33975	Canola	nucleus	56.49	56.49
CDY14552	Canola	nucleus	55.95	56.4
KRH63045	Soybean	cytosol	14.32	56.38
CDY37811	Canola	nucleus	56.22	56.22
GSMUA_AchrUn_...	Banana	nucleus	53.78	56.21
GSMUA_Achr5P16630_001	Banana	nucleus	55.41	56.16
CDX85782	Canola	nucleus	54.59	55.8
GSMUA_Achr10P...	Banana	nucleus	52.7	55.56
CDY40074	Canola	nucleus	54.32	55.52
KRH53141	Soybean	nucleus	52.7	54.93
CDY18683	Canola	cytosol	54.59	54.3
KRH64780	Soybean	nucleus	52.16	53.31
CDX81273	Canola	nucleus	55.95	53.21
CDX69866	Canola	nucleus	52.16	53.02
KRH18838	Soybean	nucleus	52.97	52.97
KRH16629	Soybean	nucleus	52.7	52.7
CDY21625	Canola	nucleus	51.08	51.92
CDY05010	Canola	nucleus	44.59	50.61
CDY14061	Canola	nucleus	44.59	50.61
CDY08443	Canola	nucleus	44.86	50.15
CDX70053	Canola	nucleus	44.05	49.85
CDX98971	Canola	nucleus	44.05	49.7
CDY50562	Canola	nucleus	44.59	49.4
CDY52616	Canola	nucleus	44.32	49.25
CDY00762	Canola	nucleus	44.05	49.24
CDX73830	Canola	nucleus	44.05	49.24
Zm00001d016312_P001	Maize	cytosol	11.89	47.31
CDY71150	Canola	nucleus, plastid	24.32	45.45
Os04t0637000-01	Rice	nucleus	48.11	44.84
CDY70396	Canola	mitochondrion	25.14	44.5
KXG27222	Sorghum	nucleus	47.03	42.65
CDX79240	Canola	nucleus	63.78	41.4
CDY42138	Canola	nucleus	36.22	41.36
TraesCS2A01G526300.1	Wheat	nucleus	46.49	41.05
TraesCS2D01G529000.1	Wheat	nucleus	47.03	40.94
TraesCS2B01G556600.1	Wheat	nucleus	47.84	40.69
Zm00001d026398_P006	Maize	nucleus	45.14	40.53
KXG38496	Sorghum	nucleus	33.78	40.19
Zm00001d024160_P003	Maize	nucleus	44.32	38.68
CDY22689	Canola	nucleus	44.32	38.32
CDY70714	Canola	nucleus	35.41	37.22
Zm00001d002143_P002	Maize	cytosol	43.78	36.9
CDY70235	Canola	nucleus	36.22	36.81
CDX70061	Canola	nucleus	44.86	36.81
CDX98963	Canola	nucleus	44.59	36.59
CDX95999	Canola	nucleus	42.97	35.97
CDY38608	Canola	nucleus	42.43	35.52
Zm00001d041428_P001	Maize	cytosol	14.86	35.26
CDX95068	Canola	nucleus	45.14	34.94
CDY00417	Canola	mitochondrion	21.89	34.91
CDX93571	Canola	nucleus	44.86	34.73
CDY06309	Canola	nucleus	44.86	34.3
Os08t0176900-01	Rice	nucleus	35.95	34.19
OQU79985	Sorghum	golgi, vacuole	45.14	32.36
HORVU2Hr1G116090.2	Barley	cytosol	30.81	26.95

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	GO:A0A078HPX4	UniProt:A0A078HPX4	EnsemblPlants:CDY38843
ProteinID:CDY38843	ProteinID:CDY38843.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00066681001	InterPro:IPR004827
InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF180	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0004EE4FA7
InterPro:bZIP	SEG:seg	:	:	:	:

Description

BnaC08g20170DBnaC08g20170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPX4]

Coordinates

chrLK032433:+:323641..325431

Molecular Weight (calculated)

41685.4 Da

IEP (calculated)

7.304

GRAVY (calculated)

-0.539

Length

370 amino acids

Sequence
(BLAST)

001: MMSSSSSNTQ AVPFRDMGMY EPFQQLSGWE NTFNTITTNN HNNNNQTSST IARTEADANN KGNYTCLYNN SVEAEPSGNN DQGEVQISDK MKRRLAQNRE
101: AARKSRLRKK AHVQQLEESR LKLSQLEQEL VRARQQGLCV VTSDATYLGP AGTMNTGIAA FEMEHKHWLE EQSKRVSEIR TALQAHISDV ELKMLVDVCL
201: NHYANLFRMK AAAAKADVFF LISGMWRTST ERFFQWIGGF RPSELLNVVM PYIEPLTDQQ LLEVTNLQQS SQQAEEALSQ GLDKLQQGLV ENIAVVESLN
301: HGGAQMASAM ENLESLEGFV NQADHLRKQS LQQMSKVLTT RQAARGLLAL GEYFHRLRAL SSLWAARPRN

Best Arabidopsis Sequence Match ( AT1G22070.1 )
(BLAST)

001: MEMMSSSSST TQVVSFRDMG MYEPFQQLSG WESPFKSDIN NITSNQNNNQ SSSTTLEVDA RPEADDNNRV NYTSVYNNSL EAEPSSNNDQ DEDRINDKMK
101: RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE
201: LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE
301: SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT

Arabidopsis Description

TGA3At1g22070 [Source:UniProtKB/TrEMBL;Acc:Q147Q9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.