Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71150 | Canola | nucleus, plastid | 22.84 | 26.77 |
| CDY70396 | Canola | mitochondrion | 22.84 | 25.36 |
| CDX68037 | Canola | nucleus | 37.93 | 23.72 |
| CDY41495 | Canola | nucleus | 36.64 | 23.04 |
| CDY38253 | Canola | nucleus | 37.07 | 22.34 |
| CDY38843 | Canola | nucleus | 34.91 | 21.89 |
| CDY21336 | Canola | nucleus | 37.5 | 20.81 |
| CDY08443 | Canola | nucleus | 28.88 | 20.24 |
| CDY50562 | Canola | nucleus | 28.88 | 20.06 |
| CDX85782 | Canola | nucleus | 31.03 | 19.89 |
| CDY40074 | Canola | nucleus | 31.03 | 19.89 |
| CDY52616 | Canola | nucleus | 28.45 | 19.82 |
| CDY42138 | Canola | nucleus | 27.59 | 19.75 |
| CDX70053 | Canola | nucleus | 27.59 | 19.57 |
| CDX98971 | Canola | nucleus | 27.59 | 19.51 |
| CDX73830 | Canola | nucleus | 27.59 | 19.34 |
| CDY00762 | Canola | nucleus | 27.59 | 19.34 |
| CDX69866 | Canola | nucleus | 30.17 | 19.23 |
| CDX88399 | Canola | nucleus | 35.34 | 19.07 |
| CDY14061 | Canola | nucleus | 26.72 | 19.02 |
| CDY05010 | Canola | nucleus | 26.72 | 19.02 |
| CDY21625 | Canola | nucleus | 29.31 | 18.68 |
| CDY08810 | Canola | nucleus | 29.31 | 18.53 |
| CDY33975 | Canola | nucleus | 29.31 | 18.38 |
| CDY37811 | Canola | nucleus | 29.31 | 18.38 |
| CDX87494 | Canola | nucleus | 34.91 | 18.24 |
| CDY14552 | Canola | nucleus | 28.45 | 17.98 |
| CDY18683 | Canola | cytosol | 28.02 | 17.47 |
| CDY70714 | Canola | nucleus | 25.43 | 16.76 |
| CDX81273 | Canola | nucleus | 28.02 | 16.71 |
| CDY70235 | Canola | nucleus | 25.86 | 16.48 |
| CDX70061 | Canola | nucleus | 29.31 | 15.08 |
| CDX98963 | Canola | nucleus | 29.31 | 15.08 |
| CDY22689 | Canola | nucleus | 27.59 | 14.95 |
| CDX95068 | Canola | nucleus | 30.17 | 14.64 |
| CDX79240 | Canola | nucleus | 35.78 | 14.56 |
| CDX93571 | Canola | nucleus | 29.74 | 14.44 |
| CDY06309 | Canola | nucleus | 29.74 | 14.26 |
| CDX95999 | Canola | nucleus | 26.72 | 14.03 |
| CDY38608 | Canola | nucleus | 26.72 | 14.03 |
Protein Annotations
| MapMan:35.1 | GO:A0A078EH31 | EnsemblPlants:CDY00417 | ProteinID:CDY00417 | ProteinID:CDY00417.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00110058001 |
| InterPro:IPR025422 | PFAM:PF14144 | PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF180 | InterPro:TGA_domain |
| UniParc:UPI0004EDDCE0 | SEG:seg | : | : | : | : |
Description
BnaC07g14090D
Coordinates
chrLK031918:+:810309..813222
Molecular Weight (calculated)
26432.8 Da
IEP (calculated)
10.635
GRAVY (calculated)
-0.481
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLDGSGGMA MAYTARKFHR ENMKILTATT TVGGGIEENG GGYTRWFFGK LSTKKKSAKR VSLSEHANHL RKQTLKQMSR ILTTKQAARG FLALGEYFQR
101: LRALREENKE KRSTRKKSQL PRVMLTRDLF IWIVAFEREY RLSLEEQNRR VNEIQTALQA HISDTEVQLL VDSCLNHYTN LFRIKADAAR ADACYLVSGG
201: WQTSTERLFQ LIGGFRPSEL LNFCVATPSS TN
101: LRALREENKE KRSTRKKSQL PRVMLTRDLF IWIVAFEREY RLSLEEQNRR VNEIQTALQA HISDTEVQLL VDSCLNHYTN LFRIKADAAR ADACYLVSGG
201: WQTSTERLFQ LIGGFRPSEL LNFCVATPSS TN
001: MEMMSSSSST TQVVSFRDMG MYEPFQQLSG WESPFKSDIN NITSNQNNNQ SSSTTLEVDA RPEADDNNRV NYTSVYNNSL EAEPSSNNDQ DEDRINDKMK
101: RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE
201: LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE
301: SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT
101: RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE
201: LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE
301: SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT
Arabidopsis Description
TGA3At1g22070 [Source:UniProtKB/TrEMBL;Acc:Q147Q9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.