CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74327
CDX91918
CDY25575
CDY34413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77920.1	CDY25575	AT1G64280.1	10662863
AT1G77920.1	CDY34413	AT1G64280.1	10662863
AT1G77920.1	CDY25575	AT1G64280.1	15634206
AT1G77920.1	CDY34413	AT1G64280.1	15634206
AT1G77920.1	CDX74327	AT3G02000.1	19218396
AT1G77920.1	CDX91918	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015646.1-P	Field mustard	nucleus	75.9	99.41
CDX88399	Canola	nucleus	92.57	95.58
AT1G77920.1	Thale cress	nucleus	72.97	88.04
CDX68037	Canola	nucleus	71.85	85.98
CDY38253	Canola	nucleus	63.51	73.25
CDY41495	Canola	nucleus	59.68	71.82
CDY38843	Canola	nucleus	59.46	71.35
CDY21336	Canola	nucleus	64.86	68.9
VIT_18s0001g04470.t01	Wine grape	nucleus	54.28	66.39
GSMUA_Achr5P16630_001	Banana	nucleus	50.68	61.64
Solyc04g072460.2.1	Tomato	nucleus	48.87	60.11
PGSC0003DMT400070884	Potato	nucleus	48.87	60.11
Solyc12g056860.1.1	Tomato	nucleus	47.07	60.06
PGSC0003DMT400043651	Potato	nucleus	48.65	59.83
CDY08810	Canola	nucleus	48.42	58.58
CDY14552	Canola	nucleus	48.2	58.31
GSMUA_AchrUn_...	Banana	nucleus	46.4	58.19
KRH63045	Soybean	cytosol	12.16	57.45
GSMUA_Achr10P...	Banana	nucleus	45.05	56.98
CDX85782	Canola	nucleus	46.4	56.91
CDY33975	Canola	nucleus	47.3	56.76
CDY40074	Canola	nucleus	45.95	56.35
CDY37811	Canola	nucleus	46.85	56.22
CDY08443	Canola	nucleus	41.44	55.59
KRH53141	Soybean	nucleus	43.92	54.93
CDX69866	Canola	nucleus	44.82	54.67
CDY18683	Canola	cytosol	45.72	54.57
CDY00762	Canola	nucleus	40.54	54.38
CDX73830	Canola	nucleus	40.54	54.38
CDY50562	Canola	nucleus	40.77	54.19
KRH18838	Soybean	nucleus	45.05	54.05
CDY52616	Canola	nucleus	40.54	54.05
KRH16629	Soybean	nucleus	45.05	54.05
CDY14061	Canola	nucleus	39.64	53.99
CDY05010	Canola	nucleus	39.64	53.99
KRH64780	Soybean	nucleus	43.92	53.87
CDX81273	Canola	nucleus	46.85	53.47
CDX98971	Canola	nucleus	39.41	53.35
CDX70053	Canola	nucleus	39.19	53.21
CDY21625	Canola	nucleus	42.79	52.2
Zm00001d016312_P001	Maize	cytosol	10.81	51.61
CDX79240	Canola	nucleus	65.32	50.88
Os04t0637000-01	Rice	nucleus	43.24	48.36
KXG27222	Sorghum	nucleus	43.24	47.06
CDY42138	Canola	nucleus	34.01	46.6
CDY71150	Canola	nucleus, plastid	20.05	44.95
Zm00001d026398_P006	Maize	nucleus	41.44	44.66
TraesCS2A01G526300.1	Wheat	nucleus	41.67	44.15
CDY70396	Canola	mitochondrion	20.72	44.02
TraesCS2D01G529000.1	Wheat	nucleus	41.67	43.53
TraesCS2B01G556600.1	Wheat	nucleus	42.57	43.45
Zm00001d024160_P003	Maize	nucleus	40.09	41.98
KXG38496	Sorghum	nucleus	28.83	41.16
Zm00001d002143_P002	Maize	cytosol	40.09	40.55
CDY70714	Canola	nucleus	30.86	38.92
CDY22689	Canola	nucleus	36.94	38.32
CDX95999	Canola	nucleus	38.06	38.24
CDY38608	Canola	nucleus	37.84	38.01
CDY70235	Canola	nucleus	30.41	37.09
CDX70061	Canola	nucleus	37.39	36.81
CDX98963	Canola	nucleus	37.16	36.59
Zm00001d041428_P001	Maize	cytosol	12.84	36.54
Os08t0176900-01	Rice	nucleus	31.53	35.99
CDY06309	Canola	nucleus	38.29	35.12
CDX95068	Canola	nucleus	37.61	34.94
CDY00417	Canola	mitochondrion	18.24	34.91
CDX93571	Canola	nucleus	37.39	34.73
OQU79985	Sorghum	golgi, vacuole	40.32	34.69
HORVU2Hr1G116090.2	Barley	cytosol	27.03	28.37

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	GO:A0A078DGF7	EnsemblPlants:CDX87494	ProteinID:CDX87494
ProteinID:CDX87494.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00146482001	InterPro:IPR004827	InterPro:IPR025422
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF180	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0004EE97B8	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

BnaA07g33790D

Coordinates

chrLK031850:-:897662..902972

Molecular Weight (calculated)

51068.7 Da

IEP (calculated)

7.739

GRAVY (calculated)

-0.547

Length

444 amino acids

Sequence
(BLAST)

001: MLHSVLSSLR KKWSKNTLWK SHTSGLWALQ EFLVADIIWC VLHRYKRTIM SPFGSVKKAL ISKQNKEEMM SSFSPTQLAS LRDMGIYEPF QQLVSWGNVY
101: KSDINDHSPN TASSSVIQVD ARVDDHNNIV KSNYNSSHNQ IEAEPCSNDH QDVDDDDDDD GRIHDKMKRR LAQNREAARK SRLRKKAYVQ QLEESRLKLS
201: QLEQELERAK QQGLRVSNSI PSGSITNTRI ATFEMEHSHW LEEQSRRISE LRIALQAHIS DIELRMLVES CLNHYANLFR MKSDAAKADV FYLISGMWRT
301: CTERFFQWIG GFRPSELLNV VMPYLQPLTD QQVLEVRNLQ QSSQQAEDAL SQGIEKLQQS LVENIVVDAF SMDYPPQMAA ALENLQALEG FVNQADHLRQ
401: QTLQQMAKIL TTRQSARGLL ALGEYLHRLR ALSSLWAARP REPT

Best Arabidopsis Sequence Match ( AT1G77920.1 )
(BLAST)

001: MMSSSSPTQL ASLRDMGIYE PFQQIVGWGN VFKSDINDHS PNTATSSIIQ VDPRIDDHNN NIKINYDSSH NQIEAEQPSS NDNQDDDGRI HDKMKRRLAQ
101: NREAARKSRL RKKAYVQQLE ESRLKLSQLE QELEKVKQQG HLGPSGSINT GIASFEMEYS HWLQEQSRRV SELRTALQSH ISDIELKMLV ESCLNHYANL
201: FQMKSDAAKA DVFYLISGMW RTSTERFFQW IGGFRPSELL NVVMPYLQPL TDQQILEVRN LQQSSQQAED ALSQGIDKLQ QSLAESIVID AVIESTHYPT
301: HMAAAIENLQ ALEGFVNQAD HLRQQTLQQM AKILTTRQSA RGLLALGEYL HRLRALSSLW AARPQEPT

Arabidopsis Description

TGA7Transcription factor TGA7 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.