CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94592
KRH01571
KRH06898
KRH37416
KRH70543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	KRH37416	AT1G64280.1	10659709
AT1G22070.1	KRH37416	AT1G64280.1	10662863
AT1G22070.1	KRH37416	AT1G64280.1	15634206
AT1G22070.1	KRH37416	AT1G64280.1	21798944
AT1G22070.1	KRG94592	AT3G02000.1	19218396
AT1G22070.1	KRH01571	AT3G02000.1	19218396
AT1G22070.1	KRH06898	AT3G02000.1	19218396
AT1G22070.1	KRH70543	AT3G02000.1	19218396
AT1G77920.1	KRH37416	AT1G64280.1	10662863
AT1G77920.1	KRH37416	AT1G64280.1	15634206
AT1G77920.1	KRG94592	AT3G02000.1	19218396
AT1G77920.1	KRH01571	AT3G02000.1	19218396
AT1G77920.1	KRH06898	AT3G02000.1	19218396
AT1G77920.1	KRH70543	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63045	Soybean	cytosol	23.94	90.43
KRH64780	Soybean	nucleus	90.14	88.4
KRH16629	Soybean	nucleus	71.55	68.65
KRH18838	Soybean	nucleus	70.99	68.11
VIT_18s0001g04470.t01	Wine grape	nucleus	57.75	56.47
Bra015646.1-P	Field mustard	nucleus	53.8	56.34
Solyc12g056860.1.1	Tomato	nucleus	54.93	56.03
Solyc04g072460.2.1	Tomato	nucleus	56.9	55.96
PGSC0003DMT400070884	Potato	nucleus	56.62	55.68
GSMUA_AchrUn_...	Banana	nucleus	54.08	54.24
CDX68037	Canola	nucleus	56.62	54.18
PGSC0003DMT400043651	Potato	nucleus	54.65	53.74
GSMUA_Achr5P16630_001	Banana	nucleus	54.93	53.42
Bra016389.1-P	Field mustard	nucleus	54.65	52.72
CDY38843	Canola	nucleus	54.93	52.7
Bra031364.1-P	Field mustard	nucleus	55.77	52.38
CDY41495	Canola	nucleus	54.37	52.3
AT1G77920.1	Thale cress	nucleus	53.8	51.9
KRG97639	Soybean	nucleus	52.68	51.66
GSMUA_Achr10P...	Banana	nucleus	50.99	51.57
KRH31239	Soybean	nucleus	52.68	51.37
CDY38253	Canola	nucleus	55.21	50.91
AT1G22070.1	Thale cress	nucleus	54.93	50.78
KRH36324	Soybean	nucleus	47.04	50.3
Zm00001d016312_P001	Maize	cytosol	12.68	48.39
KRH59415	Soybean	nucleus	50.14	48.11
KRH66777	Soybean	nucleus	38.59	47.24
CDY21336	Canola	nucleus	55.49	47.13
KRH43266	Soybean	nucleus	50.14	46.97
CDX88399	Canola	nucleus	54.93	45.35
CDX87494	Canola	nucleus	54.93	43.92
Os04t0637000-01	Rice	nucleus	47.89	42.82
KXG27222	Sorghum	nucleus	48.45	42.16
KXG38496	Sorghum	nucleus	36.9	42.12
TraesCS2D01G529000.1	Wheat	nucleus	48.17	40.24
TraesCS2A01G526300.1	Wheat	nucleus	47.32	40.1
Zm00001d026398_P006	Maize	nucleus	46.48	40.05
TraesCS2B01G556600.1	Wheat	nucleus	48.45	39.54
KRG92164	Soybean	nucleus	25.92	39.15
Zm00001d024160_P003	Maize	nucleus	46.48	38.92
KRG93068	Soybean	nucleus	48.17	38.51
KRH34622	Soybean	cytosol	23.94	36.8
Zm00001d002143_P002	Maize	cytosol	44.79	36.22
KRH20680	Soybean	nucleus	47.04	35.61
KRG95103	Soybean	nucleus	45.92	35.51
KRH66771	Soybean	nucleus	45.35	35.0
KRH70569	Soybean	nucleus	45.63	34.69
KRH75411	Soybean	nucleus	47.32	34.57
Zm00001d041428_P001	Maize	cytosol	14.93	33.97
Os08t0176900-01	Rice	nucleus	37.18	33.93
KRG90784	Soybean	nucleus	43.38	33.85
KRH35977	Soybean	nucleus	43.38	33.77
KRH13334	Soybean	nucleus	46.76	33.4
OQU79985	Sorghum	golgi, vacuole	48.17	33.14
KRH22685	Soybean	nucleus	45.07	32.65
KRH26635	Soybean	nucleus	44.23	32.17
KRH67029	Soybean	nucleus	43.94	31.77
KRH21813	Soybean	nucleus	14.37	31.68
KRH30432	Soybean	nucleus	43.94	31.64
KRH71904	Soybean	nucleus	43.1	31.61
KRG95350	Soybean	nucleus	43.66	31.57
CDX79240	Canola	nucleus	50.14	31.23
KRH25227	Soybean	nucleus	43.66	30.94
KRH32997	Soybean	nucleus	43.1	29.59
KRH39187	Soybean	cytosol, extracellular, nucleus	14.37	28.65
HORVU2Hr1G116090.2	Barley	cytosol	31.55	26.48

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100775332	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EMBL:ACUP02003451	ncoils:Coil
EnsemblPlantsGene:GLYMA_06G107300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	UniProt:I1KA28	InterPro:IPR004827	InterPro:IPR025422	ProteinID:KRH53138.1
ProteinID:KRH53139.1	ProteinID:KRH53140.1	EnsemblPlants:KRH53141	ProteinID:KRH53141	ProteinID:KRH53141.1	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF180	SMART:SM00338
SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000295F8A8	InterPro:bZIP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:8629834..8634952

Molecular Weight (calculated)

39987.1 Da

IEP (calculated)

6.644

GRAVY (calculated)

-0.286

Length

355 amino acids

Sequence
(BLAST)

001: MKMDIYEPFQ QVSLWGDNFK LDGGLNSIAS PMLMVDSTSV ENKSEDIPQE SREPSGSGAD QEATNKEVNK MLRRLAQNRE AARKSRLRKK AYVKQLESSR
101: SKLMQLELEI GKARKQGLYM GTVLDAGYIG STSETINPGI VAFEIEYGQW VEEQQRRNEE LRHAFQAQAS DVQLNVVVQS VLNHYSNLFR MKADAAKADV
201: LYLLSGVWKA SVERIFLWIG GSRPSQLLNI IVPQLEPLTD QQIVSISNLR LSSQQAEDAL SLGLEKLQQS LVHDMAVDSL GVGNFGLQMV LAMEKFEALE
301: GFVIQADHLR QQTLLHMSRI LSTHQAARGL LALGEYFHRL RTLCSLWYAR PYDLA

Best Arabidopsis Sequence Match ( AT1G22070.1 )
(BLAST)

001: MEMMSSSSST TQVVSFRDMG MYEPFQQLSG WESPFKSDIN NITSNQNNNQ SSSTTLEVDA RPEADDNNRV NYTSVYNNSL EAEPSSNNDQ DEDRINDKMK
101: RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE
201: LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE
301: SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT

Arabidopsis Description

TGA3At1g22070 [Source:UniProtKB/TrEMBL;Acc:Q147Q9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.