CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32997	Soybean	nucleus	94.63	88.59
KRH67029	Soybean	nucleus	79.75	78.62
KRG95350	Soybean	nucleus	79.75	78.62
PGSC0003DMT400029743	Potato	nucleus, plastid	55.37	70.53
VIT_08s0007g06160.t01	Wine grape	nucleus	71.07	70.06
CDY71150	Canola	nucleus, plastid	27.48	67.17
Solyc10g080410.1.1	Tomato	nucleus	62.81	66.23
Bra009233.1-P	Field mustard	cytosol	38.22	66.07
PGSC0003DMT400060865	Potato	nucleus	62.6	65.73
GSMUA_Achr9P27700_001	Banana	nucleus	50.21	64.8
Solyc10g078670.1.1	Tomato	nucleus	63.84	63.45
CDX70061	Canola	nucleus	58.68	62.97
AT5G06839.3	Thale cress	nucleus	59.5	62.61
CDX98963	Canola	nucleus	58.26	62.53
GSMUA_Achr3P11150_001	Banana	nucleus	52.48	61.35
Bra005914.1-P	Field mustard	nucleus	54.55	60.83
CDY70235	Canola	nucleus	45.25	60.16
CDY70396	Canola	mitochondrion	25.83	59.81
CDY70714	Canola	nucleus	42.36	58.24
KRH36324	Soybean	nucleus	38.84	56.63
KRH66777	Soybean	nucleus	32.85	54.83
Zm00001d020938_P002	Maize	nucleus	53.31	53.09
KXG35912	Sorghum	nucleus	53.51	51.8
Os09t0489500-02	Rice	nucleus	53.1	49.14
TraesCS5A01G265600.1	Wheat	nucleus	52.48	49.03
TraesCS5D01G273500.1	Wheat	nucleus	52.27	48.84
GSMUA_Achr9P20200_001	Banana	plastid	54.96	48.63
TraesCS5B01G265300.1	Wheat	nucleus	52.48	48.29
Zm00001d006027_P002	Maize	nucleus	50.0	48.11
KRG97639	Soybean	nucleus	35.95	48.07
KRH31239	Soybean	nucleus	35.33	46.98
KRG93068	Soybean	nucleus	41.53	45.27
HORVU5Hr1G073410.1	Barley	nucleus	52.89	45.15
KRH63045	Soybean	cytosol	8.68	44.68
KRG95103	Soybean	nucleus	40.91	43.14
KRH53141	Soybean	nucleus	31.61	43.1
KRH66771	Soybean	nucleus	40.91	43.04
KRH59415	Soybean	nucleus	32.44	42.43
KRH16629	Soybean	nucleus	32.44	42.43
KRH26635	Soybean	nucleus	42.56	42.21
KRH18838	Soybean	nucleus	32.23	42.16
KRH20680	Soybean	nucleus	40.7	42.0
KRG90784	Soybean	nucleus	39.26	41.76
KRH64780	Soybean	nucleus	31.2	41.71
KRH35977	Soybean	nucleus	39.26	41.67
KRH21813	Soybean	nucleus	13.84	41.61
KRH22685	Soybean	nucleus	41.94	41.43
KRH30432	Soybean	nucleus	41.94	41.18
KRH43266	Soybean	nucleus	32.23	41.16
KRH25227	Soybean	nucleus	41.94	40.52
KRH39187	Soybean	cytosol, extracellular, nucleus	14.88	40.45
KRH75411	Soybean	nucleus	39.46	39.3
KRH13334	Soybean	nucleus	40.29	39.24
KRH70569	Soybean	nucleus	37.81	39.19
KRG92164	Soybean	nucleus	16.53	34.04
KRH34622	Soybean	cytosol	15.91	33.33

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100776311	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EMBL:ACUP02001107	ncoils:Coil
EnsemblPlantsGene:GLYMA_02G176800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:K7K961	EnsemblPlants:KRH71904
ProteinID:KRH71904	ProteinID:KRH71904.1	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF241	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain
UniParc:UPI000233722D	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:29020262..29028421

Molecular Weight (calculated)

53930.2 Da

IEP (calculated)

7.980

GRAVY (calculated)

-0.538

Length

484 amino acids

Sequence
(BLAST)

001: MASSSVKGNT NSTTTQIEPL PPPLHLHHQP PQHHFHHHQI PDQQISFGML PSSSSASIPG NFLSKDSGAY DLGELDQAFF LYLDGQADPS SVQDQKQNSS
101: SGMRPPPTLN IFPSQPMHAV PPSNSKVNMG LPSTQTSTGS KRQPETSMAK PKPHTEAAAA PEPPKAVKRE GNLKGTTSSS EQEAPKTPDP KTLRRLAQNR
201: EAARKSRLRK KAYVQQLESS RIKLNQIEQE LQRARAQGIL MGGGNALLGG EQGFHMAMSG ISSEAAIFDV EYARWLEEHH RIVCELRAVL QEHLHENELR
301: LYVDNCLAHY DQVMNLKSMV AKTDVFHLVF GVWKTPAERC FMWIGGFRPS ELIKIILGQI EPLTEQQILG ICGLQQSTQE AEEALSQGLD ALNQSLSETI
401: TSDSLWCPPN MTNYMGQMAV AINKLSTLES FVRQADNLRH QTIHRLHQLL TTRQAARCLV AISEYFHRLR ALSSLWSTRP RQDQ

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.