Factsheet for PGSC0003DMT400060865

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080410.1.1	Tomato	nucleus	95.66	96.08
PGSC0003DMT400029743	Potato	nucleus, plastid	59.0	71.58
KRH67029	Soybean	nucleus	68.33	64.15
CDY71150	Canola	nucleus, plastid	27.33	63.64
KRG95350	Soybean	nucleus	67.68	63.54
KRH71904	Soybean	nucleus	65.73	62.6
VIT_08s0007g06160.t01	Wine grape	nucleus	65.51	61.51
Bra009233.1-P	Field mustard	cytosol	36.66	60.36
KRH32997	Soybean	nucleus	65.29	58.22
CDX70061	Canola	nucleus	56.83	58.09
CDX98963	Canola	nucleus	56.83	58.09
GSMUA_Achr9P27700_001	Banana	nucleus	47.07	57.87
GSMUA_Achr3P11150_001	Banana	nucleus	51.63	57.49
AT5G06839.3	Thale cress	nucleus	57.27	57.39
Bra005914.1-P	Field mustard	nucleus	53.15	56.45
PGSC0003DMT400024428	Potato	nucleus	39.05	55.56
CDY70235	Canola	nucleus	43.82	55.49
CDY70714	Canola	nucleus	41.65	54.55
CDY70396	Canola	mitochondrion	24.73	54.55
PGSC0003DMT400026710	Potato	mitochondrion	18.66	48.86
Zm00001d020938_P002	Maize	nucleus	51.19	48.56
PGSC0003DMT400060922	Potato	nucleus	27.98	48.13
KXG35912	Sorghum	nucleus	52.06	48.0
GSMUA_Achr9P20200_001	Banana	plastid	54.88	46.25
Os09t0489500-02	Rice	nucleus	51.41	45.32
PGSC0003DMT400067782	Potato	nucleus	31.89	44.68
Zm00001d006027_P002	Maize	nucleus	48.59	44.53
TraesCS5D01G273500.1	Wheat	nucleus	49.24	43.82
TraesCS5A01G265600.1	Wheat	nucleus	49.02	43.63
TraesCS5B01G265300.1	Wheat	nucleus	49.46	43.35
PGSC0003DMT400060926	Potato	nucleus	39.48	42.03
PGSC0003DMT400033308	Potato	nucleus	32.32	41.85
PGSC0003DMT400070884	Potato	nucleus	32.54	41.55
PGSC0003DMT400043651	Potato	nucleus	32.1	41.0
HORVU5Hr1G073410.1	Barley	nucleus	49.89	40.56
PGSC0003DMT400018306	Potato	nucleus	42.73	40.37
PGSC0003DMT400016235	Potato	nucleus	33.41	39.29
PGSC0003DMT400033741	Potato	nucleus	40.56	38.72

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102593688	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	UniProt:M1C6K4	PFAM:PF07716	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG400023678
PGSC:PGSC0003DMG400023678	EnsemblPlants:PGSC0003DMT400060865	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF241	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0002949F20	RefSeq:XP_015165945.1
InterPro:bZIP	SEG:seg	:	:	:	:

Description

TGA10 transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400023678]

Coordinates

chr10:+:57550033..57556527

Molecular Weight (calculated)

52244.7 Da

IEP (calculated)

6.958

GRAVY (calculated)

-0.632

Length

461 amino acids

Sequence
(BLAST)

001: MDSSKNQISF INQHQFFHDP QQQQQQQMEN HKNHQISFGL SSTNPENFIS KENNGGAYDL GELDQALFLY LDGQDPSSSS IQDQRQNNYG MRPPTLNIFP
101: SQPMHIEPSS TKANNNALVS QATNGSKKSS QPSIDKSEPP KVTKGEGSRK VPTSSPEQDT PKTSDPKTLR RLAQNREAAR KSRIRKKAYV QQLETSRVRL
201: SQLEHEIQRA RSQGFHVGGN VLLGGDQGFQ LINRTNISSD AAVFDLEYAR WLEEHHRLIC ELRNAVHEEQ LQEDELRIYV ENCVVHYDNI MNLKGMLAKS
301: DVFHLVSGLW KSPAERCFLW IGDFRPSELL KIIMCQIEAL TENQLLGMCG LQKSTQEAED ALSQGLEALN QSLSDTIIAS DALILGNNNE NMGNYMALAI
401: NQLSTVEAFL RQADNLRHQT IHRLLQILTT RQAARCFIAI GDYFHRLRAL SSLWLARPRH E

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.