Factsheet for PGSC0003DMT400060926

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080770.1.1	Tomato	nucleus	99.77	96.0
GSMUA_Achr3P25020_001	Banana	nucleus	60.74	79.22
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	27.25	79.19
GSMUA_Achr8P05800_001	Banana	nucleus	60.51	78.92
Os01t0279900-01	Rice	nucleus	59.58	78.42
PGSC0003DMT400024428	Potato	nucleus	58.66	78.4
EES02530	Sorghum	nucleus	58.89	77.27
TraesCS3A01G190700.2	Wheat	nucleus	58.89	76.81
TraesCS3B01G220400.2	Wheat	nucleus	58.89	76.81
HORVU3Hr1G042790.4	Barley	nucleus	58.43	76.44
TraesCS3D01G194800.2	Wheat	nucleus	58.43	76.2
Os03t0318600-01	Rice	nucleus	58.2	75.68
KXG39494	Sorghum	nucleus	58.43	75.52
KXG36997	Sorghum	nucleus	57.97	75.38
Zm00001d022542_P002	Maize	nucleus	57.74	75.08
TraesCS4B01G178600.1	Wheat	nucleus	57.74	74.85
HORVU4Hr1G052330.3	Barley	nucleus	57.74	74.85
Os07t0687700-01	Rice	nucleus	57.74	74.85
TraesCS2B01G113200.2	Wheat	nucleus	57.97	74.7
TraesCS2D01G096800.2	Wheat	nucleus	57.97	74.7
TraesCS4D01G180200.4	Wheat	nucleus	57.74	74.63
TraesCS4A01G126300.2	Wheat	nucleus	57.74	74.63
TraesCS2A01G097500.2	Wheat	nucleus	57.74	74.4
PGSC0003DMT400026710	Potato	mitochondrion	29.79	73.3
PGSC0003DMT400060922	Potato	nucleus	45.27	73.13
HORVU2Hr1G016580.5	Barley	nucleus	55.66	71.51
VIT_08s0007g05170.t01	Wine grape	nucleus	72.29	69.4
KRH66777	Soybean	nucleus	46.19	68.97
KXG22247	Sorghum	nucleus	52.19	68.07
KRG95103	Soybean	nucleus	68.13	64.27
KRH66771	Soybean	nucleus	67.44	63.48
GSMUA_Achr10P...	Banana	nucleus	66.74	63.24
Os05t0492000-00	Rice	nucleus	47.81	62.73
GSMUA_Achr11P...	Banana	nucleus	68.82	62.34
EES03778	Sorghum	nucleus	66.97	61.97
HORVU3Hr1G079010.5	Barley	nucleus	67.9	61.64
TraesCS3A01G334100.1	Wheat	nucleus	67.44	61.47
Zm00001d008225_P001	Maize	nucleus	59.58	61.43
TraesCS3D01G327600.1	Wheat	nucleus	67.44	61.22
TraesCS3B01G365100.1	Wheat	nucleus	66.97	60.8
Zm00001d028936_P001	Maize	nucleus	54.73	60.61
Zm00001d010658_P001	Maize	nucleus	48.04	60.29
TraesCS1A01G096300.1	Wheat	nucleus	44.34	57.31
Zm00001d043153_P001	Maize	nucleus	54.97	56.4
TraesCS1B01G127400.1	Wheat	nucleus	44.11	56.18
TraesCS1D01G105300.1	Wheat	nucleus	43.88	56.05
Zm00001d012553_P003	Maize	nucleus	58.2	53.62
PGSC0003DMT400033741	Potato	nucleus	59.35	53.21
HORVU1Hr1G068220.1	Barley	nucleus	41.8	52.77
Os01t0808100-01	Rice	nucleus	42.03	50.0
PGSC0003DMT400070884	Potato	nucleus	40.42	48.48
PGSC0003DMT400043651	Potato	nucleus	40.42	48.48
PGSC0003DMT400029743	Potato	nucleus, plastid	41.34	47.11
PGSC0003DMT400067782	Potato	nucleus	35.57	46.81
PGSC0003DMT400033308	Potato	nucleus	37.88	46.07
PGSC0003DMT400016235	Potato	nucleus	40.88	45.15
PGSC0003DMT400018306	Potato	nucleus	47.81	42.42
HORVU0Hr1G032230.4	Barley	nucleus	32.1	39.6
PGSC0003DMT400060865	Potato	nucleus	42.03	39.48

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	UniProt:M1C6P4	PFAM:PF00170	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG402023696
PGSC:PGSC0003DMG402023696	EnsemblPlants:PGSC0003DMT400060926	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF244	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000296B686	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

Leucine zipper transcription factor TGA [Source:PGSC_GENE;Acc:PGSC0003DMG402023696]

Coordinates

chr10:-:57213166..57222783

Molecular Weight (calculated)

47633.7 Da

IEP (calculated)

7.847

GRAVY (calculated)

-0.625

Length

433 amino acids

Sequence
(BLAST)

001: MGTEGNNTNT SRMSEFGVLE QYLGFRIGDG ANVNRSPLFN STSAANPAVG FDVSGTINRN LAPSNTSLST AAPGSHVIQL QSNLVPAAGT HPENWGESNM
101: ADSGSRTDTS TDMDGDDRNQ RIETGQSRAI AASDSSDKSK EKVLDQKTLR RLAQNREAAR KSRLRKKAYV QQLENSRLKL SQLEQDLQRA RQQGKYISNM
201: ADQSNGAGAS GTLAFDAEYS RWLEEHNKHI NELRTAVNSH ASDPELRSIV NNVTAHYDEV FRVKGNAAKA DVFHVLSGMW KTPAERCFMW IGGFRPSELL
301: KLLVNQLEPL TEQQLAGIYN LQQSSHQAED ALSQGMEALQ QSLAETLANG SPATEGSSGD VANYMGQMAM AMGKLGTLEG FLRQADNLRQ QTLQQMHRIL
401: TTRQSARALL AISEYFSRLR ALSSLWLARP REQ

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.