Factsheet for HORVU2Hr1G016580.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G003840.1
HORVU0Hr1G032230.4
HORVU1Hr1G068220.1
HORVU2Hr1G016580.5
HORVU3Hr1G019230.6
HORVU3Hr1G042790.4
HORVU3Hr1G042830.1
HORVU3Hr1G079010.5
HORVU3Hr1G106880.5
HORVU4Hr1G052330.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	10659709
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	10662863
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	12383081
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	15634206
AT5G06960.1	HORVU3Hr1G106880.5	AT2G41370.1	21798944
AT5G06960.1	HORVU0Hr1G003840.1	AT3G02000.1	19218396
AT5G06960.1	HORVU0Hr1G032230.4	AT5G06960.1	17098811
AT5G06960.1	HORVU1Hr1G068220.1	AT5G06960.1	17098811
AT5G06960.1	HORVU2Hr1G016580.5	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G042790.4	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G042830.1	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G079010.5	AT5G06960.1	17098811
AT5G06960.1	HORVU4Hr1G052330.3	AT5G06960.1	17098811
AT5G06960.1	HORVU0Hr1G032230.4	AT5G06960.1	21798944
AT5G06960.1	HORVU1Hr1G068220.1	AT5G06960.1	21798944
AT5G06960.1	HORVU2Hr1G016580.5	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G042790.4	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G042830.1	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G079010.5	AT5G06960.1	21798944
AT5G06960.1	HORVU4Hr1G052330.3	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G096800.2	Wheat	nucleus	92.88	93.15
TraesCS2B01G113200.2	Wheat	nucleus	92.88	93.15
TraesCS2A01G097500.2	Wheat	nucleus	92.88	93.15
Zm00001d022542_P002	Maize	nucleus	88.13	89.19
KXG36997	Sorghum	nucleus	88.13	89.19
Os07t0687700-01	Rice	nucleus	87.83	88.62
HORVU4Hr1G052330.3	Barley	nucleus	84.87	85.63
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	35.31	79.87
Solyc11g064950.1.1	Tomato	nucleus	74.78	77.78
PGSC0003DMT400024428	Potato	nucleus	74.78	77.78
KRH36324	Soybean	nucleus	76.56	77.71
HORVU3Hr1G042790.4	Barley	nucleus	75.37	76.74
Bra009241.1-P	Field mustard	nucleus	67.95	73.87
Solyc01g008730.2.1	Tomato	nucleus	70.62	72.78
PGSC0003DMT400026710	Potato	mitochondrion	37.98	72.73
CDY08443	Canola	nucleus	70.62	71.9
Bra034767.1-P	Field mustard	nucleus	70.33	71.6
AT5G06950.5	Thale cress	nucleus	70.03	71.52
CDY00762	Canola	nucleus	69.44	70.69
Bra001443.1-P	Field mustard	nucleus	69.44	70.69
CDX73830	Canola	nucleus	69.44	70.69
CDX70053	Canola	nucleus	67.95	70.03
CDX98971	Canola	nucleus	67.95	69.82
CDY50562	Canola	nucleus	69.14	69.76
Bra038705.1-P	Field mustard	nucleus	69.14	69.76
AT5G06960.1	Thale cress	nucleus	68.25	69.7
CDY52616	Canola	nucleus	68.84	69.67
CDY05010	Canola	nucleus	66.77	69.02
CDY14061	Canola	nucleus	66.47	68.71
Bra028713.1-P	Field mustard	nucleus	66.47	68.71
KRH66777	Soybean	nucleus	58.46	67.93
AT3G12250.4	Thale cress	nucleus	69.73	66.2
CDY42138	Canola	nucleus	60.53	62.96
PGSC0003DMT400060922	Potato	nucleus	49.26	61.94
Solyc10g080780.1.1	Tomato	cytosol	48.96	61.34
KRG93068	Soybean	nucleus	75.96	57.66
VIT_13s0084g00660.t01	Wine grape	nucleus	78.64	56.5
VIT_08s0007g05170.t01	Wine grape	nucleus	74.78	55.88
PGSC0003DMT400060926	Potato	nucleus	71.51	55.66
KRH20680	Soybean	nucleus	75.67	54.37
Solyc10g080770.1.1	Tomato	nucleus	71.51	53.56
HORVU3Hr1G079010.5	Barley	nucleus	74.78	52.83
HORVU4Hr1G025130.10	Barley	nucleus	56.38	52.34
KRG95103	Soybean	nucleus	70.92	52.07
HORVU1Hr1G068220.1	Barley	nucleus	52.82	51.9
KRH66771	Soybean	nucleus	70.62	51.74
HORVU7Hr1G042180.5	Barley	nucleus	57.57	51.46
KRH13334	Soybean	nucleus	75.37	51.11
GSMUA_Achr8P21670_001	Banana	nucleus	75.96	43.99
HORVU0Hr1G032230.4	Barley	nucleus	42.14	40.46
HORVU2Hr1G116130.4	Barley	nucleus	15.73	39.85
HORVU1Hr1G073870.2	Barley	nucleus	48.96	31.55
HORVU0Hr1G015710.1	Barley	nucleus	41.25	30.22
HORVU5Hr1G053330.5	Barley	nucleus	42.73	28.57
HORVU5Hr1G073410.1	Barley	nucleus	47.48	28.22
HORVU2Hr1G116090.2	Barley	cytosol	31.45	25.06
HORVU3Hr1G084340.10	Barley	nucleus	32.34	19.16

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	UniProt:A0A287H6S4	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0042742	GO:GO:0043565	GO:GO:0045893
EnsemblPlantsGene:HORVU2Hr1G016580	EnsemblPlants:HORVU2Hr1G016580.5	InterPro:IPR004827	InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF220	SMART:SM00338
SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000B46E936	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chrchr2H:-:38245380..38249011

Molecular Weight (calculated)

37706.1 Da

IEP (calculated)

8.679

GRAVY (calculated)

-0.473

Length

337 amino acids

Sequence
(BLAST)

001: STTGMEMFNL NILFQPEQLE SCPLEQGQSG GAIMASNSSD RSDRSDKPLD QKTLRRLAQN REAARKSRLR KKSYVQQLES SKLKLAQLEQ ELQKARQQGI
101: FISSSGDQTH AMSGNGAMTF DLEYTRWLED QNKQINELRT AVNAHASDSD LRLIVDGIMS HYDEIFKVKG VAAKADVFHI LSGMWKTPAE RCFLWLGGFR
201: PSELLKLLVN HLEPLTEQQM LGLTNLQQSS QQAEDALSQG MEALQQSLAE TLAGSLGSSS GSSGNVANYM GQMAMAMGKL GTLENFLRQA DNLRQQTLHQ
301: MQRILTIRQA SRALLAIHDY FSRLRALSSL WLARPRE

Best Arabidopsis Sequence Match ( AT5G06950.1 )
(BLAST)

001: MADTSPRTDV STDDDTDHPD LGSEGALVNT AASDSSDRSK GKMDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISGTG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNKQMN ELRSALNAHA GDSELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQLMGINNL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT
301: RQSARALLAI HDYFSRLRAL SSLWLARPRE

Arabidopsis Description

TGA2BZIP transcription factor TGA2 [Source:UniProtKB/TrEMBL;Acc:B2BDR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.