Factsheet for HORVU0Hr1G032230.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G003840.1
HORVU0Hr1G032230.4
HORVU1Hr1G068220.1
HORVU2Hr1G016580.5
HORVU3Hr1G019230.6
HORVU3Hr1G042790.4
HORVU3Hr1G042830.1
HORVU3Hr1G079010.5
HORVU3Hr1G106880.5
HORVU4Hr1G052330.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	10659709
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	10662863
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	12383081
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	15634206
AT5G06960.1	HORVU3Hr1G106880.5	AT2G41370.1	21798944
AT5G06960.1	HORVU0Hr1G003840.1	AT3G02000.1	19218396
AT5G06960.1	HORVU0Hr1G032230.4	AT5G06960.1	17098811
AT5G06960.1	HORVU1Hr1G068220.1	AT5G06960.1	17098811
AT5G06960.1	HORVU2Hr1G016580.5	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G042790.4	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G042830.1	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G079010.5	AT5G06960.1	17098811
AT5G06960.1	HORVU4Hr1G052330.3	AT5G06960.1	17098811
AT5G06960.1	HORVU0Hr1G032230.4	AT5G06960.1	21798944
AT5G06960.1	HORVU1Hr1G068220.1	AT5G06960.1	21798944
AT5G06960.1	HORVU2Hr1G016580.5	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G042790.4	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G042830.1	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G079010.5	AT5G06960.1	21798944
AT5G06960.1	HORVU4Hr1G052330.3	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G068220.1	Barley	nucleus	55.56	56.85
TraesCS1A01G096300.1	Wheat	nucleus	48.43	50.75
TraesCS1D01G105300.1	Wheat	nucleus	48.43	50.15
TraesCS1B01G127400.1	Wheat	nucleus	47.58	49.12
PGSC0003DMT400024428	Potato	nucleus	41.31	44.75
Solyc11g064950.1.1	Tomato	nucleus	41.31	44.75
Solyc01g008730.2.1	Tomato	nucleus	41.31	44.34
HORVU4Hr1G052330.3	Barley	nucleus	42.17	44.31
KRH36324	Soybean	nucleus	41.88	44.28
AT5G06950.5	Thale cress	nucleus	40.46	43.03
HORVU3Hr1G042790.4	Barley	nucleus	40.46	42.9
AT5G06960.1	Thale cress	nucleus	40.17	42.73
Os05t0492000-00	Rice	nucleus	40.17	42.73
CDY08443	Canola	nucleus	40.17	42.6
Bra034767.1-P	Field mustard	nucleus	40.17	42.6
Bra009241.1-P	Field mustard	nucleus	37.61	42.58
HORVU2Hr1G016580.5	Barley	nucleus	40.46	42.14
CDX98971	Canola	nucleus	39.32	42.07
CDY00762	Canola	nucleus	39.6	41.99
CDX70053	Canola	nucleus	39.03	41.9
Bra001443.1-P	Field mustard	nucleus	39.32	41.69
CDX73830	Canola	nucleus	39.32	41.69
Bra038705.1-P	Field mustard	nucleus	39.6	41.62
CDY50562	Canola	nucleus	39.6	41.62
CDY52616	Canola	nucleus	39.32	41.44
KXG22247	Sorghum	nucleus	38.75	40.96
Bra028713.1-P	Field mustard	nucleus	37.89	40.8
CDY42138	Canola	nucleus	37.61	40.74
CDY14061	Canola	nucleus	37.61	40.49
CDY05010	Canola	nucleus	37.61	40.49
Zm00001d010658_P001	Maize	nucleus	39.32	40.0
AT3G12250.4	Thale cress	nucleus	39.89	39.44
KRH66777	Soybean	nucleus	31.91	38.62
HORVU2Hr1G116130.4	Barley	nucleus	14.53	38.35
KRG93068	Soybean	nucleus	43.02	34.01
Solyc10g080780.1.1	Tomato	cytosol	25.07	32.71
HORVU4Hr1G025130.10	Barley	nucleus	33.62	32.51
VIT_08s0007g05170.t01	Wine grape	nucleus	41.6	32.37
VIT_13s0084g00660.t01	Wine grape	nucleus	43.02	32.2
KRH20680	Soybean	nucleus	43.02	32.2
PGSC0003DMT400060926	Potato	nucleus	39.6	32.1
HORVU3Hr1G079010.5	Barley	nucleus	43.59	32.08
HORVU7Hr1G042180.5	Barley	nucleus	33.62	31.3
Solyc10g080770.1.1	Tomato	nucleus	39.89	31.11
KRG95103	Soybean	nucleus	39.89	30.5
PGSC0003DMT400060922	Potato	nucleus	23.08	30.22
KRH66771	Soybean	nucleus	39.6	30.22
KRH13334	Soybean	nucleus	41.88	29.58
PGSC0003DMT400026710	Potato	mitochondrion	12.25	24.43
HORVU1Hr1G073870.2	Barley	nucleus	33.05	22.18
HORVU0Hr1G015710.1	Barley	nucleus	28.21	21.52
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	8.83	20.81
HORVU5Hr1G053330.5	Barley	nucleus	29.06	20.24
HORVU5Hr1G073410.1	Barley	nucleus	31.62	19.58
HORVU3Hr1G084340.10	Barley	nucleus	24.5	15.11
HORVU2Hr1G116090.2	Barley	cytosol	17.66	14.66

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	UniProt:A0A287EAR4	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:HORVU0Hr1G032230	EnsemblPlants:HORVU0Hr1G032230.4	InterPro:IPR004827	InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF206	SMART:SM00338
SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000B47C0F2	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chrchrUn:+:191713991..191716419

Molecular Weight (calculated)

38784.7 Da

IEP (calculated)

9.819

GRAVY (calculated)

-0.532

Length

351 amino acids

Sequence
(BLAST)

001: MDYGTDASTD PDVDKNQEQE PFEQGHAVLI APSDPSGKTN GKLGPKTLRR LAQNREAARR SRLRKKAYVQ QLESSSLKLA QLEQELRRAR QQGFLSTLGD
101: QADSENGANY KPPSLSRYFF LYFMLKKSAV SWSPTASSFY VEYGRWLEGQ LQKVEELRAA VSAHADDSDL QAIVDTIIAR WDEIFTLKGA AAKADAFHVL
201: SGAWTTPVER FFLWLGGFRP SEFLKVPIVD RRNLLADCAI SDQFWGERTN ASPCLFLTGV DDIAAATREP AGAPHGEAAG QYWRPATFLP ASRRSTLEGD
301: GSTATVGRRS RRGGRTVVPE LLCSLLRRWH GRNGCGGGKA WRPGRPPAAG R

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.