Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73830 | Canola | nucleus | 100.0 | 100.0 |
| CDY00762 | Canola | nucleus | 99.09 | 99.09 |
| Bra034767.1-P | Field mustard | nucleus | 95.47 | 95.47 |
| Bra038705.1-P | Field mustard | nucleus | 95.77 | 94.91 |
| Bra009241.1-P | Field mustard | nucleus | 86.1 | 91.94 |
| AT3G12250.4 | Thale cress | nucleus | 94.56 | 88.17 |
| Bra028713.1-P | Field mustard | nucleus | 79.76 | 80.98 |
| Os01t0279900-01 | Rice | nucleus | 78.25 | 78.72 |
| GSMUA_Achr8P05800_001 | Banana | nucleus | 77.95 | 77.71 |
| GSMUA_Achr3P25020_001 | Banana | nucleus | 77.95 | 77.71 |
| KRH36324 | Soybean | nucleus | 77.95 | 77.71 |
| PGSC0003DMT400024428 | Potato | nucleus | 75.23 | 76.85 |
| Solyc11g064950.1.1 | Tomato | nucleus | 75.23 | 76.85 |
| TraesCS3A01G190700.2 | Wheat | nucleus | 77.04 | 76.81 |
| TraesCS3B01G220400.2 | Wheat | nucleus | 77.04 | 76.81 |
| HORVU3Hr1G042790.4 | Barley | nucleus | 76.74 | 76.74 |
| EES02530 | Sorghum | nucleus | 76.13 | 76.36 |
| TraesCS3D01G194800.2 | Wheat | nucleus | 76.44 | 76.2 |
| KXG39494 | Sorghum | nucleus | 75.53 | 74.63 |
| Os07t0687700-01 | Rice | nucleus | 74.62 | 73.95 |
| Os03t0318600-01 | Rice | nucleus | 74.32 | 73.87 |
| HORVU4Hr1G052330.3 | Barley | nucleus | 74.02 | 73.35 |
| TraesCS4B01G178600.1 | Wheat | nucleus | 74.02 | 73.35 |
| KXG36997 | Sorghum | nucleus | 73.72 | 73.27 |
| TraesCS4A01G126300.2 | Wheat | nucleus | 74.02 | 73.13 |
| TraesCS4D01G180200.4 | Wheat | nucleus | 74.02 | 73.13 |
| Zm00001d022542_P002 | Maize | nucleus | 73.41 | 72.97 |
| Solyc01g008730.2.1 | Tomato | nucleus | 71.9 | 72.78 |
| TraesCS2D01G096800.2 | Wheat | nucleus | 73.41 | 72.32 |
| TraesCS2B01G113200.2 | Wheat | nucleus | 73.41 | 72.32 |
| TraesCS2A01G097500.2 | Wheat | nucleus | 73.41 | 72.32 |
| HORVU3Hr1G042830.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 31.72 | 70.47 |
| HORVU2Hr1G016580.5 | Barley | nucleus | 70.69 | 69.44 |
| PGSC0003DMT400026710 | Potato | mitochondrion | 36.25 | 68.18 |
| KXG22247 | Sorghum | nucleus | 63.44 | 63.25 |
| Os05t0492000-00 | Rice | nucleus | 61.63 | 61.82 |
| Zm00001d008225_P001 | Maize | nucleus | 76.13 | 60.0 |
| Zm00001d010658_P001 | Maize | nucleus | 62.24 | 59.71 |
| KRG93068 | Soybean | nucleus | 77.95 | 58.11 |
| Zm00001d028936_P001 | Maize | nucleus | 67.67 | 57.29 |
| VIT_13s0084g00660.t01 | Wine grape | nucleus | 79.46 | 56.08 |
| GSMUA_Achr10P... | Banana | nucleus | 76.44 | 55.36 |
| KRH20680 | Soybean | nucleus | 77.95 | 55.01 |
| TraesCS1A01G096300.1 | Wheat | nucleus | 55.59 | 54.93 |
| TraesCS1B01G127400.1 | Wheat | nucleus | 56.19 | 54.71 |
| GSMUA_Achr11P... | Banana | nucleus | 77.95 | 53.97 |
| TraesCS3A01G334100.1 | Wheat | nucleus | 76.74 | 53.47 |
| HORVU3Hr1G079010.5 | Barley | nucleus | 77.04 | 53.46 |
| TraesCS1D01G105300.1 | Wheat | nucleus | 54.68 | 53.39 |
| TraesCS3D01G327600.1 | Wheat | nucleus | 76.74 | 53.25 |
| TraesCS3B01G365100.1 | Wheat | nucleus | 76.44 | 53.04 |
| EES03778 | Sorghum | nucleus | 74.92 | 52.99 |
| KRH13334 | Soybean | nucleus | 76.74 | 51.11 |
| Bra015646.1-P | Field mustard | nucleus | 52.27 | 51.03 |
| HORVU1Hr1G068220.1 | Barley | nucleus | 51.06 | 49.27 |
| Zm00001d043153_P001 | Maize | nucleus | 60.73 | 47.63 |
| Bra004329.1-P | Field mustard | nucleus | 61.93 | 46.49 |
| Bra024366.1-P | Field mustard | nucleus | 50.76 | 45.78 |
| Zm00001d012553_P003 | Maize | nucleus | 64.95 | 45.74 |
| Bra009233.1-P | Field mustard | cytosol | 38.67 | 45.71 |
| Bra009063.1-P | Field mustard | nucleus | 50.15 | 45.6 |
| Bra028604.1-P | Field mustard | nucleus | 49.85 | 45.58 |
| Bra031871.1-P | Field mustard | nucleus | 50.45 | 45.14 |
| Bra016389.1-P | Field mustard | nucleus | 49.85 | 44.84 |
| Bra031364.1-P | Field mustard | nucleus | 50.45 | 44.18 |
| Bra031622.1-P | Field mustard | nucleus | 54.68 | 42.29 |
| Os01t0808100-01 | Rice | nucleus | 45.92 | 41.76 |
| Bra037809.1-P | Field mustard | nucleus | 47.73 | 40.31 |
| HORVU0Hr1G032230.4 | Barley | nucleus | 41.69 | 39.32 |
| Bra018634.1-P | Field mustard | nucleus | 55.29 | 38.53 |
| Bra037374.1-P | Field mustard | nucleus | 33.84 | 35.67 |
| Bra005914.1-P | Field mustard | nucleus | 45.32 | 34.56 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | MapMan:26.8.3.1.2 | EnsemblPlantsGene:Bra001443 | EnsemblPlants:Bra001443.1 |
| EnsemblPlants:Bra001443.1-P | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR004827 | InterPro:IPR025422 | UniProt:M4CB63 |
| PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF244 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI000254079A | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
AT3G12250 (E=1e-141) TGA6, BZIP45 | TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor
Coordinates
chrA03:+:16402067..16403906
Molecular Weight (calculated)
36832.6 Da
IEP (calculated)
9.423
GRAVY (calculated)
-0.606
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTSSRTDA STDGDTDPRD MGSERGQGML AVASDSSGRS KDKLDQKTVR RLAQNREAAR KSRLRKKAYV QQLENSRLKL TQLEQELQRA RQQGVFISSS
101: GDQAHSTGGN GALAFDAEHS RWLEEKNKQM NELRSALNAH AGDTELRIIV EGVMSHYEEL FRIKSNAAKN DVFHLLSGMW KTPAERCFLW LGGFRSSELL
201: KLIANQLEPM TERQVMGLNS LQQTSQQAED ALSQGMESLQ QSLADTLSSG TLGSSSSDNV ASYMGQMAMA MGQLGTLEGF IRQADNLRLQ TLQQMIRVLT
301: TRQSARAFLA IHDYSSRLRA LSSLWLARPR E
101: GDQAHSTGGN GALAFDAEHS RWLEEKNKQM NELRSALNAH AGDTELRIIV EGVMSHYEEL FRIKSNAAKN DVFHLLSGMW KTPAERCFLW LGGFRSSELL
201: KLIANQLEPM TERQVMGLNS LQQTSQQAED ALSQGMESLQ QSLADTLSSG TLGSSSSDNV ASYMGQMAMA MGQLGTLEGF IRQADNLRLQ TLQQMIRVLT
301: TRQSARAFLA IHDYSSRLRA LSSLWLARPR E
001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
Arabidopsis Description
TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.