Factsheet for GSMUA_Achr10P00340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P16670_001
GSMUA_Achr3P08710_001
GSMUA_Achr3P18710_001
GSMUA_Achr3P25020_001
GSMUA_Achr3P25880_001
GSMUA_Achr5P08160_001
GSMUA_Achr5P16220_001
GSMUA_Achr6P00950_001
GSMUA_Achr6P23860_001
GSMUA_Achr7P09190_001
GSMUA_Achr8P05490_001
GSMUA_Achr8P05800_001
GSMUA_Achr8P22070_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	GSMUA_Achr2P16670_001	AT1G64280.1	10659709
AT5G06960.1	GSMUA_Achr3P25880_001	AT1G64280.1	10659709
AT5G06960.1	GSMUA_Achr6P00950_001	AT1G64280.1	10659709
AT5G06960.1	GSMUA_Achr7P09190_001	AT1G64280.1	10659709
AT5G06960.1	GSMUA_Achr8P05490_001	AT1G64280.1	10659709
AT5G06960.1	GSMUA_AchrUn_...	AT1G64280.1	10659709
AT5G06960.1	GSMUA_Achr2P16670_001	AT1G64280.1	10662863
AT5G06960.1	GSMUA_Achr3P25880_001	AT1G64280.1	10662863
AT5G06960.1	GSMUA_Achr6P00950_001	AT1G64280.1	10662863
AT5G06960.1	GSMUA_Achr7P09190_001	AT1G64280.1	10662863
AT5G06960.1	GSMUA_Achr8P05490_001	AT1G64280.1	10662863
AT5G06960.1	GSMUA_AchrUn_...	AT1G64280.1	10662863
AT5G06960.1	GSMUA_Achr2P16670_001	AT1G64280.1	12383081
AT5G06960.1	GSMUA_Achr3P25880_001	AT1G64280.1	12383081
AT5G06960.1	GSMUA_Achr6P00950_001	AT1G64280.1	12383081
AT5G06960.1	GSMUA_Achr7P09190_001	AT1G64280.1	12383081
AT5G06960.1	GSMUA_Achr8P05490_001	AT1G64280.1	12383081
AT5G06960.1	GSMUA_AchrUn_...	AT1G64280.1	12383081
AT5G06960.1	GSMUA_Achr2P16670_001	AT1G64280.1	15634206
AT5G06960.1	GSMUA_Achr3P25880_001	AT1G64280.1	15634206
AT5G06960.1	GSMUA_Achr6P00950_001	AT1G64280.1	15634206
AT5G06960.1	GSMUA_Achr7P09190_001	AT1G64280.1	15634206
AT5G06960.1	GSMUA_Achr8P05490_001	AT1G64280.1	15634206
AT5G06960.1	GSMUA_AchrUn_...	AT1G64280.1	15634206
AT5G06960.1	GSMUA_Achr11P...	AT2G41370.1	21798944
AT5G06960.1	GSMUA_Achr3P08710_001	AT2G41370.1	21798944
AT5G06960.1	GSMUA_Achr5P08160_001	AT2G41370.1	21798944
AT5G06960.1	GSMUA_Achr5P16220_001	AT2G41370.1	21798944
AT5G06960.1	GSMUA_Achr8P22070_001	AT2G41370.1	21798944
AT5G06960.1	GSMUA_AchrUn_...	AT2G41370.1	21798944
AT5G06960.1	GSMUA_AchrUn_...	AT2G41370.1	21798944
AT5G06960.1	GSMUA_Achr10P...	AT3G02000.1	19218396
AT5G06960.1	GSMUA_Achr3P18710_001	AT3G02000.1	19218396
AT5G06960.1	GSMUA_Achr6P23860_001	AT3G02000.1	19218396
AT5G06960.1	GSMUA_AchrUn_...	AT3G02000.1	19218396
AT5G06960.1	GSMUA_Achr10P...	AT5G06960.1	17098811
AT5G06960.1	GSMUA_Achr11P...	AT5G06960.1	17098811
AT5G06960.1	GSMUA_Achr3P25020_001	AT5G06960.1	17098811
AT5G06960.1	GSMUA_Achr8P05800_001	AT5G06960.1	17098811
AT5G06960.1	GSMUA_Achr10P...	AT5G06960.1	21798944
AT5G06960.1	GSMUA_Achr11P...	AT5G06960.1	21798944
AT5G06960.1	GSMUA_Achr3P25020_001	AT5G06960.1	21798944
AT5G06960.1	GSMUA_Achr8P05800_001	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P25020_001	Banana	nucleus	66.96	92.17
GSMUA_Achr8P05800_001	Banana	nucleus	66.08	90.96
KRH36324	Soybean	nucleus	62.14	85.54
Solyc11g064950.1.1	Tomato	nucleus	60.39	85.19
PGSC0003DMT400024428	Potato	nucleus	60.39	85.19
Solyc01g008730.2.1	Tomato	nucleus	57.55	80.43
AT5G06950.5	Thale cress	nucleus	56.89	78.79
CDY08443	Canola	nucleus	56.89	78.55
Bra034767.1-P	Field mustard	nucleus	56.89	78.55
GSMUA_Achr11P...	Banana	nucleus	80.53	76.99
Bra009241.1-P	Field mustard	nucleus	52.08	76.77
CDY00762	Canola	nucleus	55.58	76.74
CDY50562	Canola	nucleus	56.02	76.65
Bra038705.1-P	Field mustard	nucleus	56.02	76.65
CDY52616	Canola	nucleus	55.8	76.58
CDX73830	Canola	nucleus	55.36	76.44
Bra001443.1-P	Field mustard	nucleus	55.36	76.44
PGSC0003DMT400026710	Potato	mitochondrion	29.32	76.14
CDX70053	Canola	nucleus	54.27	75.84
AT5G06960.1	Thale cress	nucleus	54.7	75.76
CDX98971	Canola	nucleus	54.27	75.61
CDY05010	Canola	nucleus	53.39	74.85
Bra028713.1-P	Field mustard	nucleus	53.17	74.54
CDY14061	Canola	nucleus	53.17	74.54
VIT_08s0007g05170.t01	Wine grape	nucleus	73.3	74.28
VIT_13s0084g00660.t01	Wine grape	nucleus	75.71	73.77
AT3G12250.4	Thale cress	nucleus	56.89	73.24
KRH66777	Soybean	nucleus	45.3	71.38
KRG93068	Soybean	nucleus	68.71	70.72
CDY42138	Canola	nucleus	49.23	69.44
KRH66771	Soybean	nucleus	69.37	68.91
KRG95103	Soybean	nucleus	68.93	68.63
KRH20680	Soybean	nucleus	70.24	68.44
PGSC0003DMT400060926	Potato	nucleus	63.24	66.74
Solyc10g080770.1.1	Tomato	nucleus	64.55	65.56
PGSC0003DMT400060922	Potato	nucleus	38.29	65.3
GSMUA_AchrUn_...	Banana	nucleus	68.27	63.41
Solyc10g080780.1.1	Tomato	cytosol	37.2	63.2
KRH13334	Soybean	nucleus	68.49	62.98
GSMUA_Achr9P15550_001	Banana	nucleus	56.89	60.61
GSMUA_Achr8P21670_001	Banana	nucleus	75.49	59.28
GSMUA_Achr5P16630_001	Banana	nucleus	45.3	56.71
GSMUA_Achr10P...	Banana	nucleus	41.58	54.13
GSMUA_AchrUn_...	Banana	nucleus	41.36	53.39
GSMUA_Achr11P...	Banana	cytosol	28.01	52.89
GSMUA_Achr9P27700_001	Banana	nucleus	40.92	49.87
GSMUA_Achr3P11150_001	Banana	nucleus	42.45	46.86
GSMUA_Achr5P26200_001	Banana	nucleus	38.07	42.86
GSMUA_Achr2P06770_001	Banana	nucleus	44.64	42.68
GSMUA_Achr10P...	Banana	nucleus	42.45	41.1
GSMUA_Achr11P...	Banana	nucleus	43.33	40.24
GSMUA_Achr3P22700_001	Banana	nucleus	41.58	37.55
GSMUA_Achr9P20200_001	Banana	plastid	42.23	35.28
GSMUA_Achr11P...	Banana	nucleus	17.72	26.21

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSMUA_Achr10G00340_001	EnsemblPlants:GSMUA_Achr10P00340_001	EnsemblPlants:GSMUA_Achr10T00340_001	InterPro:IPR004827	InterPro:IPR025422	UniProt:M0RE61
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF244	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000296DF9D	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

Transcription factor HBP-1b(c1) (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr10G00340_001]

Coordinates

chr10:-:884109..891830

Molecular Weight (calculated)

50317.2 Da

IEP (calculated)

6.750

GRAVY (calculated)

-0.477

Length

457 amino acids

Sequence
(BLAST)

001: MGSSIDGVGF EDGKLTAAGM PSFVSSTTVV QNNSREGNTT QRISDFGVLE QSITFHIDPA VSVKHSGQSI NSDPSQFGVL GKPIASTEIA PSAARVESLT
101: SFQHKEKLHS LISFSSGQFE NWGESMADAS PRTDTSTDVD TDDKNQRLER GQLAFAAASD SSDRSKDKTL DQKTLRRLAQ NREAARKSRL RKKAYVQQLE
201: SSRLKLTQLE QELQKARQQG IFISNSGDQS HATSGNGALT FDVEYARWLE EHNRQISELR AAVNAHASEN DLRVIVDGVM AHYDEIFRLK GIAAKADVFH
301: ILSGMWKTPA ERCFLWLGGF RSSELLKLLA NQLEPLTEQQ MMGICNLQQS SQQAEDALSQ GMDALQQSLS ETLAGSLGPS GTSGNVANYM GQMAMAMGKL
401: GTLENFLHQA DNLRQQTLQQ MHRILTTRQS ARALLAISDY FSRLRALSSL WLARPQE

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.