Factsheet for GSMUA_Achr3P08710_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P19920_001
GSMUA_Achr3P11230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	GSMUA_Achr1P19920_001	AT3G51180.1	21798944
AT2G41370.1	GSMUA_Achr3P11230_001	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	90.85	92.36
GSMUA_Achr5P08160_001	Banana	cytosol	91.31	91.1
GSMUA_Achr8P22070_001	Banana	cytosol	81.92	84.1
GSMUA_Achr11P...	Banana	cytosol	81.92	80.79
CDX79940	Canola	cytosol	53.76	72.24
Bra004617.1-P	Field mustard	cytosol	53.52	71.92
GSMUA_AchrUn_...	Banana	cytosol	73.71	70.09
Bra014645.1-P	Field mustard	cytosol	46.95	68.73
CDX76040	Canola	cytosol	46.71	68.38
CDY35774	Canola	cytosol	46.01	67.35
GSMUA_Achr5P16220_001	Banana	cytosol	69.25	66.89
KRH66789	Soybean	cytosol	73.94	64.68
VIT_08s0007g05740.t01	Wine grape	cytosol	73.94	64.29
PGSC0003DMT400027591	Potato	cytosol	69.25	63.99
Solyc04g040220.2.1	Tomato	cytosol	69.25	63.3
AT3G57130.1	Thale cress	cytosol	69.25	63.17
AT2G41370.1	Thale cress	cytosol	72.54	62.93
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	71.83	62.83
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	71.83	62.83
KRH72058	Soybean	cytosol	69.95	62.6
CDY23854	Canola	cytosol	70.66	62.58
Bra016938.1-P	Field mustard	cytosol	70.89	62.01
CDY06130	Canola	cytosol	66.43	61.26
Bra007306.1-P	Field mustard	cytosol	66.43	61.26
CDX72067	Canola	cytosol	66.43	61.12
Solyc10g079750.1.1	Tomato	cytosol	69.95	61.07
Os12t0138500-01	Rice	cytosol	46.24	60.62
PGSC0003DMT400076710	Potato	cytosol	69.25	60.57
PGSC0003DMT400021076	Potato	cytosol	69.48	60.41
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	65.02	59.96
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	64.79	59.74
Solyc10g079460.1.1	Tomato	cytosol	69.01	59.51
CDY30971	Canola	cytosol	62.44	58.46
Zm00001d023246_P001	Maize	cytosol	62.44	56.0
Zm00001d052468_P002	Maize	cytosol	61.5	55.63
EES16520	Sorghum	cytosol	62.68	55.62
Solyc05g018160.1.1	Tomato	cytosol	36.38	55.36
EES09234	Sorghum	cytosol	62.21	54.75
TraesCS5A01G134700.2	Wheat	cytosol	62.68	54.16
TraesCS5B01G133700.1	Wheat	cytosol	62.68	54.16
TraesCS5D01G139600.1	Wheat	cytosol	62.68	54.16
Zm00001d004966_P001	Maize	cytosol	59.62	53.7
Os11t0141900-00	Rice	cytosol	61.74	53.24
CDY33841	Canola	cytosol	10.33	44.44
GSMUA_Achr5P02120_001	Banana	cytosol	28.64	20.89
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	28.4	20.34
GSMUA_Achr8P05490_001	Banana	cytosol	27.7	20.31
GSMUA_Achr2P16670_001	Banana	cytosol	27.0	19.69
GSMUA_Achr3P25880_001	Banana	cytosol	26.06	19.54
GSMUA_AchrUn_...	Banana	cytosol	25.35	18.78
GSMUA_Achr7P09190_001	Banana	cytosol	25.35	18.78
GSMUA_Achr6P00950_001	Banana	nucleus	27.46	18.57

Protein Annotations

Gene3D:1.25.40.20	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr3G08710_001	EnsemblPlants:GSMUA_Achr3P08710_001	EnsemblPlants:GSMUA_Achr3T08710_001
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0SCY8	InterPro:NPR_central_dom	PFAM:PF11900
PFAM:PF12796	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	SMART:SM00248
SUPFAM:SSF48403	UniParc:UPI000294875F	SEG:seg	:	:	:

Description

BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G08710_001]

Coordinates

chr3:+:6299268..6301430

Molecular Weight (calculated)

45794.0 Da

IEP (calculated)

6.261

GRAVY (calculated)

-0.094

Length

426 amino acids

Sequence
(BLAST)

001: MEEALKSLSL DYLNLLINGQ AFSDVTFSVE GRLFLYSGQV SVMPQKHEPR PNCGERGCWH THCTAAVDLA LDTLTAARSF GVKQLEQITE KQLASVVEKA
101: SIEDVMKVLM ASRQQDMQQL WATCSHLVAK SGLPAEVLAK HLPIDVVARI EELRLKSSLV RRSSFVGHHP HQIDVGGPAA DLEDHHHKIR RMRRALDSSD
201: VELVKLMVMG EGLNLDDAFA LHYAVENCSR EVVKALLELG AADVNCPAGP TGKTPLHIAA EMVCPDMVAV LLDHHADPNV RTVDGVTPLD ILRTLTSDFL
301: FKGAVPGLSH IEPNKLRLCL ELVQSAALVM SREEANCGGG TGGAGNSPSS VIYPRMNPEI GACNTNSSSS SMVNLSLDSR MVYLNLGMAA QFGSKMNDGG
401: GDESGSGRPR GGGIGPSSMY PSHAFP

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.